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EBIGroupsFunctional GenomicsEventsEMBO 2007Agenda

EMBO Practical course 2009 - Agenda

EMBO Logo EMBO Practical Course on Analysis and Informatics of Microarray Data

12-17, October 2009
EBI-EMBL, Hinxton, Cambridge, UK
Monday 12th October - [Presentations For Day]
08:30 - 09:00 Registration and breakfast
9:00 - 12:30 John Quackenbush Extracting Meaning from Microarray Datasets
12:30 - 13:30 Lunch
13:30 - 17:00 John Quackenbush MeV practical
17:00 - 18:30 Poster session I
Tuesday 13th October - [Presentations For Day]
9:00 - 10:00 Nuno Barbosa-Morais

Lecture: Introduction to R and Bioconductor
10:00 - 11:00 Nuno Barbosa-Morais Lecture: Data pre-processing
11:00 - 12:30 Nuno Barbosa-Morais Hands on: Introduction to limma
12:30 - 13:30 Lunch
13:30 - 14:30 Nuno Barbosa-Morais Lecture: Experimental design
14:30 - 15:30 Nuno Barbosa-Morais Hands on: Introduction to limma
15:30 - 17:00 Nuno Barbosa-Morais Lecture: Statistics of differential expression
17:00 - 18:30 Nuno Barbosa-Morais Hands on: Introduction to limma
19:30 Dinner at Jesus College, Cambridge, sponsored by ENFIN
Wednesday 14th October - [Presentations For Day]
9:00 - 10:30 Nuno Barbosa-Morais

Lecture: linear models
10:00 - 12:30 Nuno Barbosa-Morais

Hands on: limma (differential expression)
12:30 - 13:30 Lunch
13:00 - 17:00 Nuno Barbosa-Morais Hands on: limma (differential expression)
17:00 - 18:30 Poster session II
Thursday 15th October - [Presentations For Day]
9:00 - 11:00 Denise Scholtens Lecture: Multiple testing & GSEA
11:00 - 12:30 Denise Scholtens Hands on: Multiple testing & GSEA
12:30 - 13:30 Lunch
13:30 - 14:30 Denise Scholtens Hands on: Multiple testing & GSEA
14:30 - 15:30 Nuno Barbosa-Morais Lecture: Affymetrix
15:30 - 17:00 Nuno Barbosa-Morais Hands on: Affymetrix
17:00 - 18:30 Hedi Peterson ENFIN Lecture: Functional analysis of gene lists and networks using g:Profiler, GraphWeb and KEGGanim
Friday 16th October - [Presentations For Day]
9:00 - 10:30 Richard Bourgon Lecture:Independent filtering
10:30 - 12:30 Richard Bourgon Hands on: Independent filtering
12:30 - 13:30 Lunch
13:30 - 15:00 Richard Bourgon Lecture: Genotyping/aCGH/SNPs
15:00 - 16:30 Gabriella Rustici Lecture/hands on: ArrayExpress
16:30 - 18:30 Gabriella Rustici Lecture/hands on: Array Quality Metrics
Saturday 17th October - [Presentations For Day]
9:00 - 10:30 Nuno Barbosa-Morais, Roslin Russell Hands on: Illumina
10:30 - 17:00 Nuno Barbosa-Morais, Roslin Russell, Gabriella Rustici Hands on: Analysis of participants datasets
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