BREW -- Bioinformatics Research and Education Workshops
17th to 19th April, 2002
EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge,
UK
Day 1 - Wednesday 17/4
9:30
Opening
9.40
Janet Thornton,
EBI
Structural Bioinformatics - from Structure to Function
10.40
Coffee break
11.10
Michael Lappe, EBI
Probabilistic inference of/with Protein-Protein
Interaction Networks
11.55
Virpi Ahola, Univeristy
of Turku
Identifying Conserved Amino Acids in a Multiple
Alignment of Protein Sequences
12:40
Lunch
13.50
Alvis Brazma, EBI
From microarrays to gene networks
14.50
Franz Zöllner,
University of Bielefeld
Comparing Bound and Unbound Protein Sequences for
Investigating Flexibility
15.15
Veli Mäkinen,
University of Helsinki
Local Similarity Based Point-Pattern Matching in
2D Protein Electrophoresis Gels
15.40
Coffee break
16.10
Kimmo Palin, University
of Helsinki
Correlating Transcription Factors with Binding Site
Motifs
16.55
Thomas Schlitt,
EBI
Building and Analysing Genome-wide Gene Disruption
Networks
17.20
Jouni Seppänen,
Helsinki University of Technology
Appying Nonnegative Matrix Factorisation to Gene
Expression Data
17.45
Finish
Day 2 - Thursday 18/4
9.30
Katja Kivinen, EBI
Computational Analysis of Fission Yeast Gene Regulation
10.15
Petra Hänel,
University of Bielefeld
Continuous in situ Analysis of Cellgrowth and Cellviability
10.40
Coffee break
11.10
Mathias Katzer,
Univeristy of Bielefeld
Robust Automatic Microarray Image Analysis
11.55
Teemu Kivioja, Univeristy
of Helsinki
Selecting Efficient Enzymes for cDNA-AFLP
12.20
Lunch
13.40
Christos Ouzounis,
EBI
Computational Genomics - an overview
14.40
Carsten Meyer, University
of Bielefeld
Matching and Significance Evaluation of Combined
Sequence/Structure Motifs in RNA Using Algebraic
Dynamic Programming
15.05
Thomas Töller,
Univeristy of Bielefeld
Prediction of a Potential Regulatory Stem-loop in
the Rab1A 3'-UTR
15.30
Coffee break
16.00
Alice McHardy, Univeristy
of Bielefeld
A Probabilistic Measure for Predicting Highly Expressed
Genes by Their Codon Usage
16.45
Andreas Heger, EBI
Picasso: Generating a Covering Set of Protein Profiles
17.10
Ari Rantanen, University
of Helsinki
Computing Positional Isotopomer Distribution of
Molecules from Mass Spectrometric Data
17.35
Finish
18.15
Departure for dinner
Day 3 - Friday 19/4
9.30
Ewan Birney, EBI
Genome Annotation
10.30
Coffee break
11.00
Mohamed Ibrahim
Abouelhoda, University of Bielefeld
The Enhanced Suffix Array and its Applications
11.45
Jomuna Choudhuri,
University of Bielefeld
Applications of Repeat Analysis Using REPuter: Initial
Approaches for Genomic Scale Studies
12.30
Lunch
13.45
Rolf Apweiler, EBI
14.45
Ville Rantanen,
University of Turku
A Fragment Library Based on Gaussian Mixtures Predicting
Favorable Molecular Interactions
15.10
David Kreil, EBI
15.35
Coffee break
16.05
Mikko Sillanpää,
University of Helsinki
Pedigree and Geneflow Reconstruction from Population
Data
16.50
Ming Chen, University
of Bielefeld
Petri Net based Modelling and Simulation of Metabolic
Networks in the Cell
