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Microarray Informatics at the EBI
Databases
- Archive
- Public domain functional genomics data
- Atlas
- A database of gene expression in different biological conditions
- BII
- A database for multi- 'omics studies - beta
- SAIL
- Samples and phenotypes available in biobanks and cohorts - beta
Tools
- Expression Profiler
- Online microarray data analysis tool with data links to ArrayExpress
- EBI R workbench
- Online access to R/Bioconductor at EBI - Coming soon
Standards and ontologies
- MIAME
- Minimum Information About a Microarray Experiment
- MINSEQE
- Minimum Information about a high-throughput SeQuencing Experiment
- MAGE-TAB
- MicroArray and Gene Expression Tabular
- ISA-TAB
- Investigation, Study, Assay tab-delimited format
- MIBBI
- Minimum Information for Biological and Biomedical Investigations
- EFO
- An ontology of variables in functional genomics experiments
- OBI
- An Ontology for Biomedical Investigations
Software
- SIMBioMS
- A System for Information Management in BioMedical Studies
- MAGE Tabulator
- A spreadsheet format for submitting experiments to ArrayExpress
- Bioconductor Package
- Build Bioconductor structures with ArrayExpress data
- ISA Creator
- A spreadsheet tool for submitting studies to BII
- MIAMExpress
- Online web based tool for submission to ArrayExpress
Projects
| ArrayExpress |
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| Medical Informatics |
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| Quality Metrics |
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| Research |
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| Training |
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| Other Projects |
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Other Information
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Highlights