« any species » Acidithiobacillus ferrooxidans Acinetobacter baumannii Actinobacillus pleuropneumoniae Aedes aegypti Agrotis ipsilon Agrotis segetum Amphimedon queenslandica Anaplasma phagocytophilum Anguilla anguilla Anopheles gambiae Anopheles gambiae s.s. Apis cerana Apis dorsata Apis florea Apis mellifera Apis mellifera ligustica Apis mellifera natural colony Arabidopsis arenosa Arabidopsis halleri Arabidopsis lyrata subsp. petraea Arabidopsis petraea Arabidopsis suecica Arabidopsis thaliana Ashbya gossypii Aspergillus clavatus Aspergillus fumigatus Aspergillus niger Austrofundulus limnaeus Bacillus anthracis Bacillus cereus Bacillus subtilis Bacillus subtilis strain 168 Bacillus thuringiensis Bt407 Bartonella grahamii Bartonella henselae Bartonella koehlerae Bartonella quintana Betula pendula Biomphalaria glabrata Bordetella bronchiseptica Bordetella holmesii Bordetella parapertussis Bordetella pertussis Bordetella sp. Borrelia burgdorferi Bos indicus Bos taurus Brachypodium distachyon Branchiostoma belcheri Brassica juncea Brassica napus Brassica oleracea Brassica rapa Brassica rapa subsp. pekinensis Brucella abortus Brugia malayi Bubalus bubalis Buchnera aphidicola Buchnera sp. Burkholderia cepacia Burkholderia mallei Burkholderia pseudomallei Caenorhabditis briggsae Caenorhabditis elegans Caenorhabditis remanei Callithrix jacchus Campylobacter jejuni Candida albicans Candida dubliniensis Candida glabrata Canis familiaris Cannabis sativa Capra hircus Capsella bursa pastoris Capsicum annuum Cardamine sp. SIM 2007 Carpus carpio Ceratopteris thalictroides Cervus elaphus Chlamydomonas reinhardtii Chlorocebus aethiops Chlorocebus sabaeus Ciona intestinalis Citrus aurantifolia Citrus clementina Clostridium acetobutylicum Clostridium botulinum Clostridium difficile Clostridium difficle Clostridium sporogenes Cocksfoot streak virus Coregonus clupeaformis Corynebacterium glutamicum Coturnix japonica Coxiella burnetii Cricetulus griseus Crocosphaera watsonii WH 8501 Cryptococcus gattii Cryptopygus antarcticus Cucumber mosaic virus Cucumis melo Cuscuta pentagona Cyanothece sp. Cyanothece sp. ATCC 51142 Cyclamen persicum Cymbidium ringspot virus Cyprinus carpio Danio rerio Daphnia magna Dickeya dadantii Dictyostelium discoideum Drosophila Drosophila erecta Drosophila mauritiana Drosophila melanogaster Drosophila pseudoobscura Drosophila santomea Drosophila sechellia Drosophila simulans Drosophila teissieri Drosophila yakuba Ectocarpus fasciulatus Ectocarpus siliculosus Ectomycorrhizal tissue: Paxillus involutus/Betula pendula Emiliania huxleyi Emiliania huxleyi CCMP1516 Entamoeba histolytica Enterococcus faecalis Equus caballus Erwinia chrysanthemi Escherichia coli Escherichia coli K 12 Escherichia coli K12 Escherichia coli O157:H7 Escherichia coli O157:H7 EDL933 Escherichia coli UTI89 Escherichia coli str. K12 substr. MG1655 Felis catus Festuca arundinacea Festuca brevipila Festuca rubra subsp. fallax Festuca rubra subsp. littoralis Fragaria x ananassa Francisella tularensis Gadus morhua Gallus gallus Gasterosteus aculeatus Geobacter sulfurreducens Geospiza conirostris Geospiza difficilis Geospiza fortis Geospiza magnirostris Geospiza scandens Gephyrocapsa oceanica Gerbera hybrid cultivar Glycine max Gorilla gorilla Granulibacter bethesdensis Haemophilus influenzae Halobacterium salinarum Haloferax volcanii Helicobacter pylori Herminiimonas arsenicoxydans Heterodera glycines Homo sapiens Hordeum vulgare Hordeum vulgare subsp. spontaneum Human adenovirus 5 Isochrysis galbana Lactobacillus sakei Lactobacillus salivarius Laternula elliptica Legionella pneumophila Leishmania braziliensis Leishmania donovani Leishmania infantum Leishmania major Leishmania mexicana Lepeophteirus salmonis Lepeophtheirus salmonis Lepidium sativum Leymus cinereus Leymus triticoides Linum usitatissimum Liriodendron tulipifera Listeria monocytogenes Locusta migratoria Lotus burttii Lotus corniculatus Lotus filicaulis Lotus glaber Lotus japonicus Lotus uliginosus Lumbrius rubellus Lycopersicon esculentum Macaca fascicularis Macaca mulatta Macropus eugenii Magnaporthe oryzae Marmota monax Mastomys natalensis Medicago sativa Medicago truncatula Megaphorura arctica Melon necrotic spot virus Methanobacteria Methanobacterium thermoautotrophicum Methanococcus jannaschii Methanosarcina mazei Monacrosporium haptotylum Monodelphis domestica Monosiga brevicollis Mus Musculus Mus caroli Mus musculus Mus musculus castaneus Mus musculus domesticus Mus musculus musculus Mus musculus musculus x Mus musculus castaneus Mus musculus musculus x Mus musculus domesticus Mus musculus x Mus spretus Mus spretus Musa sp. Mycobacterium avium subspecies hominissuis Mycobacterium avium subspecies paratuberculosis Mycobacterium bovis Mycobacterium smegmatis Mycobacterium tuberculosis Mycobacterium tuberculosis H37Rv Mycosphaerella graminicola Mytilus californianus Neisseria cinerea Neisseria gonorrhoeae Neisseria lactamica Neisseria meningitidis Neisseria sp. Nematostella vectensis Neosartorya fennelliae Neosartorya fischeri Nicotiana benthamiana Nicotiana tabacum Oncorhynchus mykiss Oryza sativa Oryza sativa (indica cultivar group) Oryza sativa (japonica cultivar group) Oryza sativa Indica Group Oryza sativa Japonica Group Ovis aries Pan paniscus Pan troglodytes Papio anubis Papio hamadryas Paracoccidioides brasiliensis Paxillus filamentosus Paxillus involutus Pectobacterium atrosepticum Pectobacterium carotovorum Pepper mild mottle virus Peromyscus polionotus Petunia x hybrida Phaseolus coccineus Phodopus sungorus Photobacterium profundum Physcomitrella patens Phytophthora sojae Picea glauca Pichia pastoris Pinus resinosa Pisum sativum Plasmodium berghei Plasmodium falciparum Plasmodium knowlesi Plasmodium yoelii Platichthys flesus Pleuronichthys verticalis Polytrichum juniperinum Pongo pygmaeus Populus Populus balsamifera Populus euphratica Populus fremontii x Populus angustifolia Populus tremula Populus tremula x Populus alba Populus tremuloides Populus trichocarpa x Populus deltoides Porphyromonas gingivalis Potato virus X Pristionchus pacificus Prochlorococcus marinus Pseudomonas aeruginosa Pseudomonas aeruginosa PAO1 Pseudomonas aeruginosa UCBPP PA14 Pseudomonas putida Ralstonia eutropha H16 Ralstonia pickettii Ralstonia solanacearum Ralstonia syzygii Rattus norvegicus Rattus rattus Rhizobium leguminosarum Ribes nigrum Rorippa amphibia Rorippa amphibia x Rorippa sylvestris Rorippa sylvestris Rubus idaeus SARS coronavirus Saccharomyces bayanus Saccharomyces boulardii Saccharomyces cerevisiae Saccharomyces pastorianus Salmo salar Salmo trutta Salmon salar Salmonella enterica Salmonella enterica serotype Typhimurium Salmonella enterica serovar Typhimurium Salmonella enterica subspecies I Salmonella enteritidis Salmonella typhi Salmonella typhimurium Schistosoma japonicum Schistosoma mansoni Schizosaccharomyces pombe Schmidtea mediterranea Selaginella Senecio aethnensis Senecio cambrensis Senecio chrysanthemifolius Senecio squalidus subsp. squalidus Senecio vulgaris subsp. vulgaris Sinorhizobium meliloti Solanum lycopersicum Solanum tuberosum Sordaria macrospora Sparus auratus Staphylococcus aureus Strelkovimermis Streptococcus agalactiae Streptococcus gordonii Streptococcus mutans UA159 Streptococcus pneumoniae Streptococcus pyogenes Streptomyces coelicolor Streptomyces coelicolor A3(2) Strongyloides ratti Sulfolobus acidocaldarius Sulfolobus solfataricus Sus scrofa Sylvia communis Synechococcus elongatus Synechococcus phage S PM2 Synechocystis sp. PCC 6803 Taeniopygia guttata Thermoproteus tenax Thiomonas sp. 3As Thlaspi caerulescens Tobacco rattle virus Tomato yellow leaf curl virus Toxoplasma gondii Treponema pallidum Tribolium castaneum Trichoderma reesei QM6a Trichomonas vaginalis Trichoplax adhaerens Trifolium repens Triticum aestivum Triticum turgidum subsp. dicoccoides Trypanosoma brucei Trypanosoma cruzi Turnip mosaic virus Veionella parvula Vibrio cholerae Vicia narbonensis Vigna unguiculata Vitis aestivalis Vitis hybrid cultivar Vitis riparia Vitis riparia x Vitis berlandieri Vitis rotundifolia Vitis vinifera Vulpes vulpes Watermelon mosaic virus Xenopus (Silurana) tropicalis Xenopus laevis Xenopus laevis x Xenopus muelleri Xenopus tropicalis Xylella fastidiosa Yersinia enterocolitica Yersinia pestis Yersinia pseudotuberculosis Youcai mosaic virus Zea mays Zymomonas mobilis null synthetic construct unknown

« any type » age all pairs all pairs antisense array comparison array platform variation behavior behavioral design type binding site identification binding site identification biological process cell component comparison cell cycle cell cycle design, time series design, co expression cell process cell type comparison cell type comparison design, array platform comparison design, replicate design, co expression cell type comparisson cellular modification desig cellular modification cellular process classifier clinical history clinical treatment co expression co expression design disease state co expression design, disease state co expression design, individual genetic characteristics comarative genomic hybridization comparative genome hybridization compound based compound treatment compound treatment design;co expression compound treatment desing compound treatment dsign data integration development or differentiation development or differentiation design,co expression development or differentiation design;transcription profiling developmenta stage disease stage disease state disease state design, in vivo design, co expression design, compound treatment disease state design, replicate design, co expression DNA methylation profiling dose response dye swap environmental history environmental history envrionmental history ex vivo ExperimentDesignType family history gene mutation genetic modification genetic modification genetic modification design, in vivo design, comparative genome hybridization genetic variation genotype comparison genotyping grow condition growth condition growth condition hardware variation high throughput sequencing immunoprecipitation imprinting in vitro in vivo individual comparison individual comparison design,disease state individual genetic characteristics individual genetic characteristics design unknown design type individual genetic characteristics design, co expression individual genetic charactersitics individual genetics characteristics infection immunotherapy infection or injury injury innate behavior is expressed Logical Set loop metabolomics methylation profiling Mutant / Wild type comparison non targeted transgenic variation normalization testing operator variation operon identification optimization organism organism part comparison organism status pathogenicity perturbational phenotype physiological process quality control testing reference reference design, comparative genome hybridization design, disease state design, co expression replicate retrospective study RNA stability self vs self sequencing sex software variation species stimulated design type stimulus or stress stimulus or stress design,co expression strain or line strain abundance strain line strain line strain or line strain or line strain or line design;compound treatment tiling path time series time series transcript identification Transcription profiling of skeletal muscle after gene transfer by electroporation translational bias treatment unknown experiment design type

« any factor » 15 metagroups 369 groups 4 metagroups 6 metagroups a rna yield action Age age age(d) age(months) age(years) age at diagnosis alive at endpoint amount labeled extract amp labeling input mass amplification antibody atmosphere behavior behaviour bio source bio material purity bio source bio source provider bio source type bioassay data transformation biopsy biopsy number biopsy site biosource type BioSourceProvider blood nonblood metagroups buffer c rna yield ug cancer site carbon source cell treatment cell type cell)line cell line cell property cell type CellLine cellular component change light chemotherapy treatment chip antibody ChiP antibody chip antibody chip antibody chip column chip lot chip row chromosomal aberration chromosomal aberration classification chromosomal translocation classifier clinial information clinical history clinical history age clinical history extra intestinal clinical history fibrostenotic clinical history fistula Clinical Information clinical information clinical treatment ClinicalHistory clinincal treatment cohort complex action compound compound1 compound2 compound based treatment compound treatment compund control spike calibration cover slip type cultivar culture density culture synchrony current milliamperes damage intensity damage response data transformation protocol type dead of disease delivery method developmental stage developmental stage(units) diet differentiation state differentiation state disease free survival disease location disease stage disease staging disease state DiseaseState distal recurrence distal recurrence time distance distant metastasis free survival Dose dose dose(ng/ml) dose(ug per l) dose(units) dose1 dose (n m) duration ecotype enviromental factor environment environmental stress environmental history environmental stress EnvironmentalHistory epigenetic status erb b2 positive (ihc) estrogen receptor status ethnicity event death event distant metastases event free survival time exercise experiment experimental ExperimentalFactorCategory exposure external control ratio extraction protocol family history family relationship feature extraction fluidics machine fluidics station followup time fraction gene knock out generation genetic modifiation genetic modification genetic trait GeneticModification genotype gentype geographic location gravity greowth condition grow growth conditiion growth condition growth condtion growth phase GrowthCondition growthcondition harvest histology histology::type hormonal therapy host hyb operator hybridization hybridization date hybridization volume hydrostatic pressure Immunoprecipitate immunoprecipitate Individual individual individual genetic characteristic Infect infect initial time point injury irradiate irradiation knock in expression label labeling laboratory Light light lymph node stage lymph node status material type media node positive nucleic acid nucleic acid extraction number of injections nutrients Observation observation operator variation organism organism part organism part organism status OrganismPart other other: rin overall survival p53 positive (ihc) passage pathogen pathogen test percent oxygen performer phase Phenotype phenotype physical characteristics plasmid plate location platform ploidy pmt gain pool population pretreatment progesterone receptor status prognostic subgroup Protocol protocol protocol type radiation sensitivity class radiation treatment recurrence recurrence time replicate replicate description type risk status rna integrity rna rin number RNAi rnai sample sample preparation kit sample preparation user sample time sample type sampling site sampling time sampling time point scanner scanner model serotype sex shear stress si rna sirna site slide number software software version species starvation stimulus stimulus or stress strain or line StrainOrLine stress study sub array survival time targeted cell type temperature temperature(degree c test test result Time time time(h) time(m) time(min) time9h) time before disease progression time to development of distant metastases time unit transfect treatment treatment time tumor grading tumor percentage tumor reduction tumor size tumor size (mm) TumorStaging vehicle wash zinc dose

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« any type » #grow #hybridization #labeling #scanning #treatment acclimatization acquisition across bioassay data set function adjustment alignment and animal care array manufacturing array manufacturing protocol behavioral stimulus bioassay data transformation biological fluid collection biopsy cell culture cell growth and RNA isolation cell culture cell purification Cell subpopulation isolation compound cy3 labeling data collection data generation data transformation differential expression dissect dissection dye swap merge Extraction extraction Feature extraction feature extraction flag filter fractionate genetic modification Grow grow Growth growth growth protocol harvest high throughput sequencing histological slide preparation Hybridisation hybridization image acquisition image acqusition immunoprecipitate immunoprecipitation incubate infect inoculate irradiate Labeling labeling Labelling linear amplification loess group normalization loess scaled group normalization lowess group normalization lowess normalization median log normalization Mouse primary Megakaryocytes stage MK3: none. mouse CD1 day 14.5 fetal liver cultured megakaryocytes collected at day 3 Mouse primary Megakaryocytes stage MK4: none. mouse CD1 day 14.5 fetal liver cultured megakaryocytes collected at day 4 Mouse primary Megakaryocytes stage MK6: none. mouse CD1 day 14.5 fetal liver cultured megakaryocytes collected at day 6 Mouse primary Megakaryocytes stage MKP : none. mouse CD1 day 14.5 fetal liver cultured megakaryocytes collected at day 4 normalisation normalization normalization data transformation nucelic acid extraction nucleic acid extraction nucleic acid hybridization nucleic acid extraction PCR amplification pool pooling ProtocolType purify quality control quantification quantile normalization protocol type ratio statistics normalization replicate analysis reverse transcription RNA RNA Extraction sacrifice sample Sample Growth Conditions Sample Treatment sample treatment protocol Sampling Scanning sequencing Skeletal muscle biopsy was obtained after a two hours of hyperinsulinaemic (40 mU/m2/min) euglycemic clamp. Muscle biopsy was obtained from the vastus lateralis muscle SkeSkeletal muscle biopsy was obtained before a two hours of hyperinsulinaemic (40 mU/m2/min) euglycemic clamp. Muscle biopsy was obtained from the vastus lateralis muscle specified biomaterial action spike preparation split starvation store test Total RNA transcript profiling transfect transformation transformation protocol series unknown protocol type wash