InterPro results for type:binding_site

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Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site (IPR020563) The Escherichia coli RuvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination. RuvC protein cleaves cruciform junctions, which are formed by...

APOBEC/CMP deaminase, zinc-binding (IPR016192) Cytidine deaminase (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (dCMP deaminase) hydrolyzes dCMP into dU...

Sigma-54 interaction domain, ATP-binding site 1 (IPR025662) Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a ...

Blue (type 1) copper protein, binding site (IPR028871) Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This entry represents a conserved site that in...

Lipoxygenase, iron binding site (IPR020833) Lipoxygenases are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants...

Superoxide dismutase, copper/zinc, binding site (IPR018152) Copper/Zinc superoxide dismutase (SODC) is one of the three forms of an enzyme that catalyzes the dismutation of superoxide radicals. SODC binds one atom each of zinc and copper. ...

Rhodopsin, retinal binding site (IPR018229) The bacterial opsins are retinal-binding proteins that provide light- dependent ion transport and sensory functions to a family of halophilic bacteria. They are integral membrane ...

Adrenodoxin, iron-sulphur binding site (IPR018298) Adrenodoxin, putidaredoxin and terpredoxin are soluble 2Fe-2S iron-sulphur proteins that act as single electron carriers. They are a subgroup of the ferredoxin family of iron-sulp...

DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site (IPR015887) Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these do...

Pyridoxal-phosphate binding site (IPR021115) Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reacti...