InterProScan sequence search

This form allows you to scan your sequence for matches against the InterPro protein signature databases, using InterProScan tool.
Enter or paste a protein sequence in FASTA format (complete or not - e.g. PMPIGSKERPTFFEIFKTRCNKADLGPISLN), with a maximum length of 40,000 amino acid long.
Please note that you can only scan one sequence at a time.
Alternatively, read more about InterProScan for other ways of running sequences through InterProScan.

Analyse your protein sequence

Advanced options

Select the applications to run: Uncheck all Select all

Member databases

    Families, domains, sites & repeats
    Structural domains

Other sequence features


InterProScan logo InterProScan is a sequence analysis application (nucleotide and protein sequences) that combines different protein signature recognition methods into one resource.
More about InterProScan.

Need more help?

If you need more info on InterProScan, you can either look at the:
Documentation page
Online training course
or contact us directly with your question.