Release notes

Latest release note

v.59
InterPro 59.0
15th September 2016

Features include:

  • New member database: Structure-Function Linkage Database (SFLD) version 1.
  • Updated to Pfam version 30.0.
  • Integration of 780 new methods from the CDD (687), Pfam (26), SUPERFAMILY (1), PANTHER (46), TIGRFAMs (2), HAMAP (1) and SFLD (17) databases.

Previous release notes

Contents and coverage of InterPro 59.0

InterPro protein matches are now calculated for all UniProtKB and UniParc proteins. The following statistics are for all UniProtKB proteins.
InterPro release 59.0 contains 29608 entries (last entry: IPR033981), representing:

InterPro cites 49996 publications in PubMed.

Member database information

Signature database Version Signatures* Integrated signatures**
CATH-Gene3D 3.5.0 2626 1724
CDD 3.14 11273 1005
HAMAP 201605.11 2087 2080
PANTHER 10.0 95118 5400
Pfam 30.0 16306 15714
PIRSF 3.01 3285 3223
PRINTS 42.0 2106 1996
ProDom 2006.1 1894 1129
PROSITE patterns 20.119 1309 1290
PROSITE profiles 20.119 1136 1107
SFLD 1 480 17
SMART 7.1 1312 1265
SUPERFAMILY 1.75 2019 1414
TIGRFAMs 15.0 4488 4453

* Some signatures may not have matches to UniProtKB proteins.
** Not all signatures of a member database may be integrated at the time of an InterPro release

Sequence database Version Count Count of proteins matching
any signature integrated signatures
UniProtKB2016_086745774055593719 (82.4%)53753167 (79.7%)
UniProtKB/TrEMBL2016_086690575355056832 (82.3%)53220993 (79.5%)
UniProtKB/Swiss-Prot2016_08551987536887 (97.3%)532174 (96.4%)

InterPro2GO

Total number of GO terms mapped to InterPro entries - 32234

List of InterPro2GO mappings. These are also available through the EBI GO browser QuickGO