Release notes

Latest release note

v.58
InterPro 58.0
9th June 2016

Features include:

  • New member database: Conserved Domain Database (CDD) version 3.14.
  • Updated to HAMAP version 201605.11.
  • Integration of 542 new methods from the CDD (318), Pfam (1), SUPERFAMILY (1), HAMAP (43) and PANTHER (179) databases.

Previous release notes

Contents and coverage of InterPro 58.0

InterPro protein matches are now calculated for all UniProtKB and UniParc proteins. The following statistics are for all UniProtKB proteins.
InterPro release 58.0 contains 29415 entries (last entry: IPR033739), representing:

InterPro cites 49073 publications in PubMed.

Member database information

Signature database Version Signatures* Integrated signatures**
CATH-Gene3D 3.5.0 2626 1725
CDD 3.14 11273 318
HAMAP 201605.11 2087 2080
PANTHER 10.0 95118 5358
Pfam 29.0 16295 15699
PIRSF 3.01 3285 3223
PRINTS 42.0 2106 2001
ProDom 2006.1 1894 1130
PROSITE patterns 20.119 1309 1289
PROSITE profiles 20.119 1136 1108
SMART 7.1 1312 1265
SUPERFAMILY 1.75 2019 1417
TIGRFAMs 15.0 4488 4452

* Some signatures may not have matches to UniProtKB proteins.
** Not all signatures of a member database may be integrated at the time of an InterPro release

Sequence database Version Count Count of proteins matching
any signature integrated signatures
UniProtKB2016_066458005353262848 (82.5%)51536456 (79.8%)
UniProtKB/TrEMBL2016_066402866852726736 (82.3%)51004698 (79.7%)
UniProtKB/Swiss-Prot2016_06551385536112 (97.2%)531758 (96.4%)

InterPro2GO

Total number of GO terms mapped to InterPro entries - 32052

List of InterPro2GO mappings. These are also available through the EBI GO browser QuickGO