Latest release note
2nd April 2015
- An update to TIGRFAMs (15.0), HAMAP (201502.04).
- Integration of 315 new methods from the CATH-Gene3D, HAMAP, PANTHER, PIRSF, Pfam, ProDom, SUPERFAMILY and TIGRFAMs databases.
- The UniProt Knowledgebase (UniProtKB) has witnessed an exponential growth in the last few years, due to vastly increased submission of multiple genomes for the same or closely related organisms. This is especially true for bacterial sequences, where different strains of the same species have been sequenced and submitted. To reduce redundancy, the UniProtKB team has identified and removed sequences corresponding to highly redundant bacterial proteomes (46.9 million entries) from UniProtKB. As the consequence, there is a 50% decrease in the number of proteins matched by InterPro 51.0.
Contents and coverage of InterPro 51.0
InterPro protein matches are now calculated for all UniProtKB and UniParc proteins. The following statistics are for
all UniProtKB proteins.
InterPro release 51.0 contains 27244 entries (last entry: IPR030934), representing:
InterPro cites 44233 publications in PubMed.
Member database information
|Signature database||Version||Signatures*||Integrated signatures**|
* Some signatures may not have matches to UniProtKB proteins.
** Not all signatures of a member database may be integrated at the time of an InterPro release
|Sequence database||Version||Count||Count of proteins matching|
|any signature||integrated signatures|
|UniProtKB||2015_04||47262724||38880653 (82.3%)||37698895 (79.8%)|
|UniProtKB/TrEMBL||2015_04||46714516||38349396 (82.1%)||37171557 (79.6%)|
|UniProtKB/Swiss-Prot||2015_04||548208||531257 (96.9%)||527338 (96.2%)|
Total number of GO terms mapped to InterPro entries - 30340