Release 29.0, 20th October 2010

Previous release notes

New features include:

Contents and coverage of InterPro 29.0

InterPro protein matches are now calculated for all UniProtKB and UniParc proteins. The following statistics are for all UniProtKB proteins. InterPro release 29.0 contains 21123 entries, representing:

Active site 93
Binding site 64
Conserved site 599
Domain 5680
Family 13382
PTM 16
Region 1028
Repeat 261

Last entry: IPR023210

32445 publications in PUBMED are referenced from InterPro.

Member database information

Signature Database Version Signatures* Integrated Signatures**
GENE3D 3.3.0 2386 1204
HAMAP 180510 1656 1179
PANTHER 6.1 30128 2260
PIRSF 2.73 3233 2764
PRINTS 40.0 2000 1963
PROSITE patterns 20.66 1308 1292
PROSITE profiles 20.66 901 837
Pfam 24.0 11912 11462
PfamB 24.0 142303 0
ProDom 2006.1 1894 1007
SMART 6.1 895 883
SUPERFAMILY 1.73 1774 1111
TIGRFAMs 9.0 3808 3796

* Some signatures may not have matches to UniProtKB proteins.

** Not all signatures of a member database may be integrated at the time of an InterPro release.

Sequence Database Version Count count of proteins matching
any signature integrated signatures
UniProtKB 2010_11 12869322 11029188 (85.7%) 10223817 (79.4%)
UniProtKB/TrEMBL 2010_11 12347303 10522000 (85.2%) 9725938 (78.8%)
UniProtKB/Swiss-Prot 2010_11 522019 507188 (97.2%) 497879 (95.4%)

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