Release 28.0, 11th August 2010
New features include:
- This release includes an update to HAMAP (180510) and the integration of 114 new methods from the HAMAP, Gene3D and PRINTS databases.
- Please Note: Pfam release 24.0 matches were calculated using HMMER3. The majority of the updated signatures were stable; however some had significant increases or decreases in the numbers of proteins they matched (+/- 30% change), which changed the taxonomy and/or biology based on protein matches. We are reviewing these entries, checking that the InterPro entry annotation is still valid and reflects the taxonomy and biology of the proteins matched by the Pfam signatures. Those Pfam signatures which have not yet been through this review process were therefore temporarily removed from InterPro and will be re-integrated into the InterPro database during 2010. If you have any questions about this, please contact us via support.
Contents and coverage of InterPro 28.0
InterPro protein matches are now calculated for all UniProtKB and UniParc proteins. The following statistics are for all UniProtKB proteins. InterPro release 28.0 contains 20837 entries, representing:
Last entry: IPR022869
32320 publications in PUBMED are referenced from InterPro.
Member database information
|Signature Database||Version||Signatures*||Integrated Signatures**|
* Some signatures may not have matches to UniProtKB proteins.
** Not all signatures of a member database may be integrated at the time of an InterPro release.
|Sequence Database||Version||Count||count of proteins matching|
|any signature||integrated signatures|
|UniProtKB||2010_09||12155553||10328217 (85.0%)||9563347 (78.7%)|
|UniProtKB/TrEMBL||2010_09||11636205||9824016 (84.4%)||9068650 (77.9%)|
|UniProtKB/Swiss-Prot||2010_09||519348||504201 (97.1%)||494697 (95.3%)|