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Release Notes

Release 35.0, 15 December, 2011

Previous release notes

New features include:

  • An update to PIRSF (2.77), HAMAP (140911) and SMART (6.2).
  • the integration of 322 new methods from the GENE3D, HAMAP, PANTHER, PIRSF, Pfam, SMART and SUPERFAMILY databases.

Contents and coverage of InterPro 35.0

InterPro protein matches are now calculated for all UniProtKB and UniParc proteins. The following statistics are for all UniProtKB proteins. InterPro release 35.0 contains 22361 entries, representing:

Active site101
Binding site67
Conserved site634
Domain6330
Family14954
PTM16
Repeat259

Last entry: IPR024950

InterPro cites 33502 publications in PubMed.

Member database information

Signature DatabaseVersionSignatures*Integrated Signatures**
GENE3D3.3.02386 1440
HAMAP1409111702 1686
PANTHER7.069566 2377
PIRSF2.772951 2950
PRINTS41.12050 2004
PROSITE patterns20.721308 1292
PROSITE profiles20.72922 897
Pfam25.012273 12017
PfamB25.020000 0
ProDom2006.11894 1106
SMART6.21008 1002
SUPERFAMILY1.731774 1205
TIGRFAMs10.14023 4003

* Some signatures may not have matches to UniProtKB proteins.

** Not all signatures of a member database may be integrated at the time of an InterPro release.



Sequence DatabaseVersionCountcount of proteins matching
any signatureintegrated signatures
UniProtKB2011_121904392916522423 (86.8%)15170611 (79.7%)
UniProtKB/TrEMBL2011_121851027216003520 (86.5%)14661619 (79.2%)
UniProtKB/Swiss-Prot2011_12533657518903 (97.2%)508992 (95.4%)

InterPro to GO

Feedback

We need your help and would welcome any feedback. If you find errors or omissions please let us know. You can contact us at: EBI Support.

Copyright

InterPro - Integrated Resource Of Protein Domains And Functional Sites. Copyright (C) 2001 The InterPro Consortium. This manual and the accompanying database may be copied and redistributed freely, without advance permission, provided that this Copyright statement is reproduced with each copy.

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InterPro 35.0