Release notes
Latest release note
InterPro 44.0
25th September 2013
New features include:
- An update to SUPERFAMILY (1.75), PIRSF (2.84), PANTHER (8.1).
- Integration of 178 new methods from the PANTHER, PIRSF and Pfam databases.
Contents and coverage of InterPro 44.0
InterPro protein matches are now calculated for all UniProtKB and UniParc proteins. The following statistics are for
all UniProtKB proteins.
InterPro release 44.0 contains 25090 entries (last entry: IPR028375), representing:
InterPro cites 38931 publications in PubMed.
Member database information
| Signature database | Version | Signatures* | Integrated signatures** |
|---|---|---|---|
| CATH-Gene3D | 3.5.0 | 2626 | 1549 |
| HAMAP | 201302.26 | 1820 | 1812 |
| PANTHER | 8.1 | 76721 | 3339 |
| PIRSF | 2.84 | 3251 | 3224 |
| PRINTS | 42.0 | 2106 | 2037 |
| PROSITE patterns | 20.89 | 1308 | 1291 |
| PROSITE profiles | 20.89 | 1049 | 1025 |
| Pfam | 27.0 | 14831 | 13579 |
| PfamB | 26.0 | 20000 | 0 |
| ProDom | 2006.1 | 1894 | 1111 |
| SMART | 6.2 | 1008 | 999 |
| SUPERFAMILY | 1.75 | 2019 | 1210 |
| TIGRFAMs | 13.0 | 4284 | 4271 |
* Some signatures may not have matches to UniProtKB proteins.
** Not all signatures of a member database may be integrated at the time of an InterPro release
| Sequence database | Version | Count | Count of proteins matching | |
|---|---|---|---|---|
| any signature | integrated signatures | |||
| UniProtKB | 2013_09 | 43362837 | 38231678 (88.2%) | 35355969 (81.5%) |
| UniProtKB/TrEMBL | 2013_09 | 42821879 | 37704708 (88.1%) | 34836889 (81.4%) |
| UniProtKB/Swiss-Prot | 2013_09 | 540958 | 526970 (97.4%) | 519080 (96.0%) |
InterPro2GO
Total number of GO terms mapped to InterPro entries - 27046
List of InterPro2GO mappings. These are also available through the EBI GO browser QuickGO
