Domain

HRP1, RNA recognition motif 1 (IPR034156)

Short name: Hrp1_RRM1

Overlapping homologous superfamilies

Domain relationships

Description

This entry represents the RNA recognition motif 2 (RRM2) of Hrp1p and similar proteins. Hrp1p is a sequence-specific trans-acting factor that is essential for mRNA 3'-end formation in yeast Saccharomyces cerevisiae. It can be UV cross-linked to RNA and specifically recognizes the (UA)6 RNA element required for both the cleavage and poly(A) addition steps. Moreover, Hrp1p can shuttle between the nucleus and the cytoplasm, and play an additional role in the export of mRNAs to the cytoplasm. Hrp1p also interacts with Rna15p and Rna14p, two components of CF1A [PMID: 9334319, PMID: 11344258]. In addition, Hrp1p functions as a factor directly involved in modulating the activity of the nonsense-mediated mRNA decay (NMD) pathway; it binds specifically to a downstream sequence element (DSE)-containing RNA and interacts with Upf1p, a component of the surveillance complex, further triggering the NMD pathway [PMID: 10882134].

Hrp1p contains two central RNA recognition motifs (RRMs) and an arginine-glycine-rich region harboruing repeats of the sequence RGGF/Y.

Contributing signatures

Signatures from InterPro member databases are used to construct an entry.
CDD