Domain

Ribonuclease M5-like, TOPRIM domain (IPR034141)

Short name: TOPRIM_RNase_M5-like

Overlapping homologous superfamilies

None.

Domain relationships

  • TOPRIM domain (IPR006171)
    • Ribonuclease M5-like, TOPRIM domain (IPR034141)

Description

This topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain is found in Ribonuclease M5 (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria [PMID: 16077031].

The TOPRIM domain has two conserved motifs, one of which centres at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function [PMID: 9722641].

Contributing signatures

Signatures from InterPro member databases are used to construct an entry.
CDD