Conserved Site

Solute-binding protein family 3, conserved site (IPR018313)

Short name: SBP_3_CS

Description

Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. Most of the bacterial ABC (ATP-binding cassette) importers are composed of one or two transmembrane permease proteins, one or two nucleotide-binding proteins and a highly specific periplasmic solute-binding protein. In Gram-negative bacteria the solute-binding proteins are dissolved in the periplasm, while in archaea and Gram-positive bacteria, their solute-binding proteins are membrane-anchored lipoproteins [PMID: 8003968, PMID: 18310026].

On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [PMID: 8336670] into eight families or clusters, which generally correlate with the nature of the solute bound. This entry represents a conserved site found in the extracellular solute-binding protein family 3 members from Gram-positive bacteria, Gram-negative bacteria and archaea.

Familiy 3 members include:

  • Histidine-binding protein (gene hisJ) of Escherichia coli and related bacteria. An homologous lipoprotein exists in Neisseria gonorrhoeae.
  • Lysine/arginine/ornithine-binding proteins (LAO) (gene argT) of Escherichia coli and related bacteria are involved in the same transport system than hisJ. Both solute-binding proteins interact with a common membrane-bound receptor hisP of the binding protein dependent transport system HisQMP.
  • Glutamine-binding proteins (gene glnH) of Escherichia coli and Bacillus stearothermophilus.
  • Glutamate-binding protein (gene gluB) of Corynebacterium glutamicum.
  • Arginine-binding proteins artI and artJ of Escherichia coli.
  • Nopaline-binding protein (gene nocT) from Agrobacterium tumefaciens.
  • Octopine-binding protein (gene occT) from Agrobacterium tumefaciens.
  • Major cell-binding factor (CBF1) (gene: peb1A) from Campylobacter jejuni.
  • Bacteroides nodosus protein aabA.
  • Cyclohexadienyl/arogenate dehydratase of Pseudomonas aeruginosa, a periplasmic enzyme which forms an alternative pathway for phenylalanine biosynthesis.
  • Escherichia coli protein fliY.
  • Vibrio harveyi protein patH.
  • Escherichia coli hypothetical protein ydhW.
  • Bacillus subtilis hypothetical protein yckB.
  • Bacillus subtilis hypothetical protein yckK.

GO terms

Biological Process

GO:0006810 transport

Molecular Function

GO:0005215 transporter activity

Cellular Component

No terms assigned in this category.

Contributing signatures

Signatures from InterPro member databases are used to construct an entry.
PROSITE patterns