Family

Syd (IPR009948)

Short name: Syd

Overlapping homologous superfamilies

Family relationships

None.

Description

This family contains the Syd protein that has been implicated in the Sec-dependent transport of polypeptides across the inner membrane in bacteria. Syd has been shown to bind the SecY subunit of membrane-embedded SecYEG heterotrimer (also known as core translocon or SecY complex) which is a conserved protein-conducting channel essential for the biogenesis of most of the secretory and integral membrane proteins [PMID: 19139097]. The SecY-binding site of Syd is a conserved concave and electronegative groove that forms interactions with the electropositive loops of the SecY subunit [PMID: 9645430]. Syd is also known to verify the proper assembly of the SecY complex in the membrane by interfering with protein translocation only when the channel displays abnormal SecY-SecE associations [PMID: 21632250].

GO terms

Biological Process

No terms assigned in this category.

Molecular Function

No terms assigned in this category.

Cellular Component

GO:0009898 cytoplasmic side of plasma membrane

Contributing signatures

Signatures from InterPro member databases are used to construct an entry.
CDD
HAMAP
Pfam