MHC class II, alpha chain, N-terminal (IPR001003)

Short name: MHC_II_a_N

Overlapping homologous superfamilies

Domain relationships



Major Histocompatibility Complex (MHC) glycoproteins are heterodimeric cell surface receptors that function to present antigen peptide fragments to T cells responsible for cell-mediated immune responses. MHC molecules can be subdivided into two groups on the basis of structure and function: class I molecules present intracellular antigen peptide fragments (~10 amino acids) on the surface of the host cells to cytotoxic T cells; class II molecules present exogenously derived antigenic peptides (~15 amino acids) to helper T cells. MHC class I and II molecules are assembled and loaded with their peptide ligands via different mechanisms. However, both present peptide fragments rather than entire proteins to T cells, and are required to mount an immune response.

Class II MHC glycoproteins are expressed on the surface of antigen-presenting cells (APC), including macrophages, dendritic cells and B cells. MHC II proteins present peptide antigens that originate extracellularly from foreign bodies such as bacteria. Proteins from the pathogen are degraded into peptide fragments within the APC, which sequesters these fragments into the endosome so they can bind to MHC class II proteins, before being transported to the cell surface. MHC class II receptors display antigens for recognition by helper T cells (stimulate development of B cell clones) and inflammatory T cells (cause the release of lymphokines that attract other cells to site of infection) [PMID: 15120183].

MHC class II molecules are comprised of two membrane-spanning chains, alpha and beta, of similar size. Both chains consist of two globular domains (N- and C-terminal), and a transmembrane segment to anchor them to the membrane [PMID: 7612235]. A groove in the structure acts as the peptide-binding site.

This entry represents the N-terminal domain (also called alpha-1 domain) of the alpha chain.

GO terms

Biological Process

GO:0019882 antigen processing and presentation
GO:0006955 immune response

Molecular Function

No terms assigned in this category.

Cellular Component

GO:0042613 MHC class II protein complex
GO:0016020 membrane

Contributing signatures

Signatures from InterPro member databases are used to construct an entry.