Download

InterProScan

NameInterPro dataDescriptionLink
InterProScan 5.5-48.0v48.0Complete documentation regarding downloading, installing and using the latest version of InterProScan 5 *recommended version*.HTML
InterProScan 4.8v43.1This is the FTP site for downloading InterProScan 4.8, *no longer supported or updated*.HTML

InterPro

You can download InterPro's content in a number of ways:

XML and other flat files

NameDescriptionFile nameFormatLink
Entry list XML file listing each entry, the signatures that it contains, its abstract, GO terms, etc. - it contains the equivalent to the Entry pages on the web interface. A DTD file exists describing the format. interpro.xml.gzgzipped
Protein matched complete All UniProtKB proteins and the InterPro entries and individual signatures they match, in XML format. Proteins without any matches to InterPro are also included. This file is used by the InterProScan4 software to look up results. A DTD file exists describing the format. match_complete.xml.gzgzipped
Unimes sequences All unimes (metagenomics) sequences and the InterPro entries and individual signatures they match, in XML format. unimes_match.tar.gz gzipped
Uniparc sequences All uniparc (UniProt Archive) sequences and the InterPro entries and individual signatures they match, in XML format. uniparc_match.tar.gzgzipped
UniProtKB proteins All UniProtKB proteins and the InterPro entries and individual signatures they match, in a tab-delimited format. protein2ipr.dat.gzgzipped
Entry relationships tree File describing the hierarchy of relationships between InterPro's entries (i.e. families and their subfamilies) in a simple text-based format. ParentChildTreeFile.txtTXT
List of GO terms Mappings of InterPro entries to Gene Ontology (GO) terms. interpro2goTXT
Latest release note The current release notes, in text-based format. release_notes.txtTXT

See all downloads available on the FTP site.

From individual web pages

Using BioMart

You can use BioMart to construct more complex queries. BioMart enables you to query and download (for example) InterPro abstracts, protein and signature matches, taxonomy data and GO annotations in a range of formats.