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InterPro: IPR019834 Glycoside hydrolase, family 8, conserved site
Protein matches
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UniProtKB Matches: 234 proteins |
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Accession
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IPR019834 Glyco_hydro_8_CS |
Type
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Conserved_site |
Signatures
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InterPro Relationships
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Found in
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IPR002037 Glycoside hydrolase, family 8
IPR008928 Six-hairpin glycosidase-like
IPR012341 Six-hairpin glycosidase
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InterPro annotation
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Entry Details in BioMart
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Abstract
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O-Glycosyl hydrolases EC:3.2.1. are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [1, 2, 3]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site [4]. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in clans.
Glycoside hydrolase family 8 GH8 comprises enzymes with several known activities; endoglucanase (EC:3.2.1.4); lichenase (EC:3.2.1.73); chitosanase (EC:3.2.1.132). These enzymes were formerly known as cellulase family D [5]. The most conserved region in these enzymes is a stretch of about 20 residues that contains two conserved aspartates. The first asparatate is thought [6] to act as the nucleophile in the catalytic mechanism. This region as a signature pattern in this entry.
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Structural links
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Database links
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Publications
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1.
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Henrissat B, Callebaut I, Fabrega S, Lehn P, Mornon JP, Davies G.
Conserved catalytic machinery and the prediction of a common fold for several families of glycosyl hydrolases.
Proc. Natl. Acad. Sci. U.S.A. 92 7090-4 1995
[PubMed: 7624375]
http://www.pubmedcentral.nih.gov/picrender.fcgi?tool=EBI&pubmedid=7624375&action=stream&blobtype=pdf
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2.
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Davies G, Henrissat B.
Structures and mechanisms of glycosyl hydrolases.
Structure 3 853-9 1995
[PubMed: 8535779]
http://dx.doi.org/10.1016/S0969-2126(01)00220-9
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3.
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Bairoch A.
Classification of glycosyl hydrolase families and index of glycosyl hydrolase entries in SWISS-PROT.
1999
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4.
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Henrissat B, Coutinho PM.
Carbohydrate-Active Enzymes server.
1999
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5.
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Henrissat B, Claeyssens M, Tomme P, Lemesle L, Mornon JP.
Cellulase families revealed by hydrophobic cluster analysis.
Gene 81 83-95 1989
[PubMed: 2806912]
http://dx.doi.org/10.1016/0378-1119(89)90339-9
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6.
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Alzari PM, Souchon H, Dominguez R.
The crystal structure of endoglucanase CelA, a family 8 glycosyl hydrolase from Clostridium thermocellum.
Structure 4 265-75 1996
[PubMed: 8805535]
http://dx.doi.org/10.1016/S0969-2126(96)00031-7
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Additional Reading
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Gilkes NR, Henrissat B, Kilburn DG, Miller RC Jr, Warren RA.
Domains in microbial beta-1, 4-glycanases: sequence conservation, function, and enzyme families.
Microbiol. Rev. 55 1991 303-15
[PubMed: 1886523]
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=EBI&pubmedid=1886523
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Yasutake Y, Kawano S, Tajima K, Yao M, Satoh Y, Munekata M, Tanaka I.
Structural characterization of the Acetobacter xylinum endo-beta-1,4-glucanase CMCax required for cellulose biosynthesis.
Proteins 64 2006 1069-77
[PubMed: 16804941]
http://dx.doi.org/10.1002/prot.21052
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Henrissat B.
A classification of glycosyl hydrolases based on amino acid sequence similarities.
Biochem. J. 280 ( Pt 2) 1991 309-16
[PubMed: 1747104]
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=EBI&pubmedid=1747104
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Schmidt A, Gonzalez A, Morris RJ, Costabel M, Alzari PM, Lamzin VS.
Advantages of high-resolution phasing: MAD to atomic resolution.
Acta Crystallogr. D Biol. Crystallogr. 58 2002 1433-41
[PubMed: 12198299]
http://dx.doi.org/10.1107/S0907444902011368
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Guerin DM, Lascombe MB, Costabel M, Souchon H, Lamzin V, Beguin P, Alzari PM.
Atomic (0.94 A) resolution structure of an inverting glycosidase in complex with substrate.
J. Mol. Biol. 316 2002 1061-9
[PubMed: 11884144]
http://dx.doi.org/10.1006/jmbi.2001.5404
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Sakihama Y, Adachi W, Shimizu S, Sunami T, Fukazawa T, Suzuki M, Yatsunami R, Nakamura S, Takenaka A.
Crystallization and preliminary X-ray analyses of the active and the inactive forms of family GH-8 chitosanase with subclass II specificity from Bacillus sp. strain K17.
Acta Crystallogr. D Biol. Crystallogr. 60 2004 2081-3
[PubMed: 15502334]
http://dx.doi.org/10.1107/S0907444904022668
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Adachi W, Sakihama Y, Shimizu S, Sunami T, Fukazawa T, Suzuki M, Yatsunami R, Nakamura S, Takenaka A.
Crystal structure of family GH-8 chitosanase with subclass II specificity from Bacillus sp. K17.
J. Mol. Biol. 343 2004 785-95
[PubMed: 15465062]
http://dx.doi.org/10.1016/j.jmb.2004.08.028
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Beguin P.
Molecular biology of cellulose degradation.
Annu. Rev. Microbiol. 44 1990 219-48
[PubMed: 2252383]
http://dx.doi.org/10.1146/annurev.mi.44.100190.001251
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InterPro 23.1
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