spacer
spacer

Jump to: InterProScan Databases Documentation FTP site Help Advanced search

InterPro: IPR019834 Glycoside hydrolase, family 8, conserved site

Protein matchesHelp
UniProtKB
Matches:
234 proteins
AccessionHelp IPR019834 Glyco_hydro_8_CS
TypeHelp Conserved_site
SignaturesHelp
InterPro RelationshipsHelp
Found in IPR002037 Glycoside hydrolase, family 8
IPR008928 Six-hairpin glycosidase-like
IPR012341 Six-hairpin glycosidase
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

O-Glycosyl hydrolases EC:3.2.1. are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [1, 2, 3]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site [4]. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in clans.

Glycoside hydrolase family 8 GH8 comprises enzymes with several known activities; endoglucanase (EC:3.2.1.4); lichenase (EC:3.2.1.73); chitosanase (EC:3.2.1.132). These enzymes were formerly known as cellulase family D [5].

The most conserved region in these enzymes is a stretch of about 20 residues that contains two conserved aspartates. The first asparatate is thought [6] to act as the nucleophile in the catalytic mechanism. This region as a signature pattern in this entry.

Structural linksHelp
SCOP: a.102.1.2
CATH: 1.50.10.10
Database linksHelp
Enzyme: EC:3.2.1.4

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR019834 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
A3DC29 Endoglucanase A

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR016134 Cellulosome enzyme, dockerin type I
IPR019834 Glycoside hydrolase, family 8, conserved site
IPR012341 Six-hairpin glycosidase
IPR008928 Six-hairpin glycosidase-like
IPR018247 EF-Hand 1, calcium-binding site
IPR002105 Cellulosome enzyme, dockerin type I, calcium-binding motif
IPR002037 Glycoside hydrolase, family 8
IPR018242 Dockerin type 1
PDB Chain
ModBase
CATH Domain
SWISS-MODEL
SCOP Domain

PublicationsHelp
1. Henrissat B, Callebaut I, Fabrega S, Lehn P, Mornon JP, Davies G.
Conserved catalytic machinery and the prediction of a common fold for several families of glycosyl hydrolases.
Proc. Natl. Acad. Sci. U.S.A. 92 7090-4 1995 [PubMed: 7624375]
http://www.pubmedcentral.nih.gov/picrender.fcgi?tool=EBI&pubmedid=7624375&action=stream&blobtype=pdf
2. Davies G, Henrissat B.
Structures and mechanisms of glycosyl hydrolases.
Structure 3 853-9 1995 [PubMed: 8535779]
http://dx.doi.org/10.1016/S0969-2126(01)00220-9
3. Bairoch A.
Classification of glycosyl hydrolase families and index of glycosyl hydrolase entries in SWISS-PROT.
1999
4. Henrissat B, Coutinho PM.
Carbohydrate-Active Enzymes server.
1999
5. Henrissat B, Claeyssens M, Tomme P, Lemesle L, Mornon JP.
Cellulase families revealed by hydrophobic cluster analysis.
Gene 81 83-95 1989 [PubMed: 2806912]
http://dx.doi.org/10.1016/0378-1119(89)90339-9
6. Alzari PM, Souchon H, Dominguez R.
The crystal structure of endoglucanase CelA, a family 8 glycosyl hydrolase from Clostridium thermocellum.
Structure 4 265-75 1996 [PubMed: 8805535]
http://dx.doi.org/10.1016/S0969-2126(96)00031-7

Additional ReadingHelp
Gilkes NR, Henrissat B, Kilburn DG, Miller RC Jr, Warren RA.
Domains in microbial beta-1, 4-glycanases: sequence conservation, function, and enzyme families.
Microbiol. Rev. 55 1991 303-15 [PubMed: 1886523]
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=EBI&pubmedid=1886523
Yasutake Y, Kawano S, Tajima K, Yao M, Satoh Y, Munekata M, Tanaka I.
Structural characterization of the Acetobacter xylinum endo-beta-1,4-glucanase CMCax required for cellulose biosynthesis.
Proteins 64 2006 1069-77 [PubMed: 16804941]
http://dx.doi.org/10.1002/prot.21052
Henrissat B.
A classification of glycosyl hydrolases based on amino acid sequence similarities.
Biochem. J. 280 ( Pt 2) 1991 309-16 [PubMed: 1747104]
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=EBI&pubmedid=1747104
Schmidt A, Gonzalez A, Morris RJ, Costabel M, Alzari PM, Lamzin VS.
Advantages of high-resolution phasing: MAD to atomic resolution.
Acta Crystallogr. D Biol. Crystallogr. 58 2002 1433-41 [PubMed: 12198299]
http://dx.doi.org/10.1107/S0907444902011368
Guerin DM, Lascombe MB, Costabel M, Souchon H, Lamzin V, Beguin P, Alzari PM.
Atomic (0.94 A) resolution structure of an inverting glycosidase in complex with substrate.
J. Mol. Biol. 316 2002 1061-9 [PubMed: 11884144]
http://dx.doi.org/10.1006/jmbi.2001.5404
Sakihama Y, Adachi W, Shimizu S, Sunami T, Fukazawa T, Suzuki M, Yatsunami R, Nakamura S, Takenaka A.
Crystallization and preliminary X-ray analyses of the active and the inactive forms of family GH-8 chitosanase with subclass II specificity from Bacillus sp. strain K17.
Acta Crystallogr. D Biol. Crystallogr. 60 2004 2081-3 [PubMed: 15502334]
http://dx.doi.org/10.1107/S0907444904022668
Adachi W, Sakihama Y, Shimizu S, Sunami T, Fukazawa T, Suzuki M, Yatsunami R, Nakamura S, Takenaka A.
Crystal structure of family GH-8 chitosanase with subclass II specificity from Bacillus sp. K17.
J. Mol. Biol. 343 2004 785-95 [PubMed: 15465062]
http://dx.doi.org/10.1016/j.jmb.2004.08.028
Beguin P.
Molecular biology of cellulose degradation.
Annu. Rev. Microbiol. 44 1990 219-48 [PubMed: 2252383]
http://dx.doi.org/10.1146/annurev.mi.44.100190.001251
spacer
spacer
InterPro 23.1