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InterPro: IPR019800 Glycoside hydrolase, family 3, active site

Protein matchesHelp
UniProtKB
Matches:
1510 proteins
AccessionHelp IPR019800 Glyco_hydro_3_AS
TypeHelp Active_site
SignaturesHelp
InterPro RelationshipsHelp
Found in IPR001764 Glycoside hydrolase, family 3, N-terminal
IPR017853 Glycoside hydrolase, catalytic core
GO Term annotationHelp
Process GO:0005975 carbohydrate metabolic process
Function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

O-Glycosyl hydrolases EC:3.2.1. are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [1, 2, 3]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site [4]. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in clans.

Glycoside hydrolase family 3 GH3 comprises enzymes with a number of known activities; beta-glucosidase (EC:3.2.1.21); beta-xylosidase (EC:3.2.1.37); N-acetyl beta-glucosaminidase (EC:3.2.1.52); glucan beta-1,3-glucosidase (EC:3.2.1.58); cellodextrinase (EC:3.2.1.74); exo-1,3-1,4-glucanase (EC:3.2.1). These enzymes are two-domain globular proteins that are N-glycosylated at three sites [5]. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772.

The signature pattern in these enzymes is centred on a conserved aspartic acid residue which has been shown [6], in Aspergillus wentii beta-glucosidase A3, to be implicated in the catalytic mechanism.

Structural linksHelp
SCOP: c.1.8.7
CATH: 3.20.20.300
Database linksHelp
Enzyme: EC:3.2.1.52

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR019800 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
P06835 Beta-glucosidase

P40406 Uncharacterized lipoprotein ybbD

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR002772 Glycoside hydrolase, family 3, C-terminal
IPR019800 Glycoside hydrolase, family 3, active site
IPR017853 Glycoside hydrolase, catalytic core
IPR001764 Glycoside hydrolase, family 3, N-terminal
PDB Chain
ModBase

PublicationsHelp
1. Henrissat B, Callebaut I, Fabrega S, Lehn P, Mornon JP, Davies G.
Conserved catalytic machinery and the prediction of a common fold for several families of glycosyl hydrolases.
Proc. Natl. Acad. Sci. U.S.A. 92 7090-4 1995 [PubMed: 7624375]
http://www.pubmedcentral.nih.gov/picrender.fcgi?tool=EBI&pubmedid=7624375&action=stream&blobtype=pdf
2. Davies G, Henrissat B.
Structures and mechanisms of glycosyl hydrolases.
Structure 3 853-9 1995 [PubMed: 8535779]
http://dx.doi.org/10.1016/S0969-2126(01)00220-9
3. Bairoch A.
Classification of glycosyl hydrolase families and index of glycosyl hydrolase entries in SWISS-PROT.
1999
4. Henrissat B, Coutinho PM.
Carbohydrate-Active Enzymes server.
1999
5. Varghese JN, Hrmova M, Fincher GB.
Three-dimensional structure of a barley beta-D-glucan exohydrolase, a family 3 glycosyl hydrolase.
Structure 7 179-90 1999 [PubMed: 10368285]
http://dx.doi.org/10.1016/S0969-2126(99)80024-0
6. Bause E, Legler G.
Isolation and structure of a tryptic glycopeptide from the active site of beta-glucosidase A3 from Aspergillus wentii.
Biochim. Biophys. Acta 626 459-65 1980 [PubMed: 6783081]
http://dx.doi.org/10.1016/0005-2795(80)90142-7

Additional ReadingHelp
Henrissat B.
A classification of glycosyl hydrolases based on amino acid sequence similarities.
Biochem. J. 280 ( Pt 2) 1991 309-16 [PubMed: 1747104]
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=EBI&pubmedid=1747104
Castle LA, Smith KD, Morris RO.
Cloning and sequencing of an Agrobacterium tumefaciens beta-glucosidase gene involved in modifying a vir-inducing plant signal molecule.
J. Bacteriol. 174 1992 1478-86 [PubMed: 1537792]
http://ukpmc.ac.uk/picrender.cgi?tool=EBI&pubmedid=1537792&action=stream&blobtype=pdf
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InterPro 23.1