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InterPro: IPR018490 Cyclic nucleotide-binding-like

Protein matchesHelp
UniProtKB
Matches:
11443 proteins
AccessionHelp IPR018490 cNMP_bd-like
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR014710 RmlC-like jelly roll fold
Children IPR000595 Cyclic nucleotide-binding
Found in IPR002373 cAMP/cGMP-dependent protein kinase
IPR002374 cGMP-dependent protein kinase, core
IPR003938 Potassium channel, voltage-dependent, EAG/ELK/ERG
IPR003949 Potassium channel, voltage-dependent, EAG
IPR003950 Potassium channel, voltage-dependent, ELK
IPR003967 Potassium channel, voltage-dependent, ERG
IPR006916 Popeye protein
IPR012198 cAMP-dependent protein kinase regulatory subunit
IPR016232 cGMP-dependent protein kinase
IPR016846 Uncharacterised conserved protein UCP026673, ion channel, cNMP-binding
IPR018418 Na+/H+ exchanger, isoforms 7/8, conserved region
Contains IPR018488 Cyclic nucleotide-binding, conserved site
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [1, 2, 3]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.

Structural linksHelp
PDB - click here

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR018490 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O88703 Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2

P07278 cAMP-dependent protein kinase regulatory subunit

P13861 cAMP-dependent protein kinase type II-alpha regulatory subunit

P16905 cAMP-dependent protein kinase type I regulatory subunit

P30625 cAMP-dependent protein kinase regulatory subunit

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR002373 cAMP/cGMP-dependent protein kinase
IPR003117 cAMP-dependent protein kinase, regulatory subunit, type I/II alpha/beta
IPR003938 Potassium channel, voltage-dependent, EAG/ELK/ERG
IPR000595 Cyclic nucleotide-binding
IPR005821 Ion transport
IPR018490 Cyclic nucleotide-binding-like
IPR013621 Ion transport N-terminal
IPR012198 cAMP-dependent protein kinase regulatory subunit
IPR018488 Cyclic nucleotide-binding, conserved site
IPR014710 RmlC-like jelly roll fold
PDB Chain
ModBase
CATH Domain
SWISS-MODEL
SCOP Domain

PublicationsHelp
1. Korner H, Sofia HJ, Zumft WG.
Phylogeny of the bacterial superfamily of Crp-Fnr transcription regulators: exploiting the metabolic spectrum by controlling alternative gene programs.
FEMS Microbiol. Rev. 27 559-92 2003 [PubMed: 14638413]
http://dx.doi.org/10.1016/S0168-6445(03)00066-4
2. Busby S, Ebright RH.
Transcription activation by catabolite activator protein (CAP).
J. Mol. Biol. 293 199-213 1999 [PubMed: 10550204]
http://dx.doi.org/10.1006/jmbi.1999.3161
3. Kaupp UB.
The cyclic nucleotide-gated channels of vertebrate photoreceptors and olfactory epithelium.
Trends Neurosci. 14 150-7 1991 [PubMed: 1710853]
http://dx.doi.org/10.1016/0166-2236(91)90087-B

Additional ReadingHelp
Altieri SL, Clayton GM, Silverman WR, Olivares AO, De la Cruz EM, Thomas LR, Morais-Cabral JH.
Structural and energetic analysis of activation by a cyclic nucleotide binding domain.
J. Mol. Biol. 381 2008 655-69 [PubMed: 18619611]
http://dx.doi.org/10.1016/j.jmb.2008.06.011
Flynn GE, Black KD, Islas LD, Sankaran B, Zagotta WN.
Structure and rearrangements in the carboxy-terminal region of SpIH channels.
Structure 15 2007 671-82 [PubMed: 17562314]
http://dx.doi.org/10.1016/j.str.2007.04.008
Napoli AA, Lawson CL, Ebright RH, Berman HM.
Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps.
J. Mol. Biol. 357 2006 173-83 [PubMed: 16427082]
http://dx.doi.org/10.1016/j.jmb.2005.12.051
Eiting M, Hageluken G, Schubert WD, Heinz DW.
The mutation G145S in PrfA, a key virulence regulator of Listeria monocytogenes, increases DNA-binding affinity by stabilizing the HTH motif.
Mol. Microbiol. 56 2005 433-46 [PubMed: 15813735]
http://dx.doi.org/10.1111/j.1365-2958.2005.04561.x
Joyce MG, Levy C, Gabor K, Pop SM, Biehl BD, Doukov TI, Ryter JM, Mazon H, Smidt H, van den Heuvel RH, Ragsdale SW, van der Oost J, Leys D.
CprK crystal structures reveal mechanism for transcriptional control of halorespiration.
J. Biol. Chem. 281 2006 28318-25 [PubMed: 16803881]
http://dx.doi.org/10.1074/jbc.M602654200
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InterPro 23.1