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InterPro: IPR018336 Ribonuclease PH, conserved site

Protein matchesHelp
UniProtKB
Matches:
1086 proteins
AccessionHelp IPR018336 RNase_PH_CS
TypeHelp Conserved_site
SignaturesHelp
InterPro RelationshipsHelp
Found in IPR001247 Exoribonuclease, phosphorolytic domain 1
IPR002381 Ribonuclease phosphorolytic, bacterial-type
IPR020568 Ribosomal protein S5 domain 2-type fold
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Prokaryotic ribonuclease PH (EC:2.7.7.56) (RNase PH) is a phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates [1]. There is a similar protein in Caenorhabditis elegans that belongs to this group.

More information about these proteins can be found at Protein of the Month: RNA Exosomes [2]. This entry represents a highly conserved region which is located in the central part of these proteins.

Structural linksHelp
SCOP: d.14.1.4
Database linksHelp
Enzyme: EC:2.7.7.56

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR018336 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
A8WQQ5 Putative exosome complex exonuclease RRP41

B0CAB9 Ribonuclease PH

O67069 Ribonuclease PH

Q17533 Putative exosome complex exonuclease RRP41

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR020568 Ribosomal protein S5 domain 2-type fold
IPR015847 Exoribonuclease, phosphorolytic domain 2
IPR001247 Exoribonuclease, phosphorolytic domain 1
IPR018336 Ribonuclease PH, conserved site
IPR002381 Ribonuclease phosphorolytic, bacterial-type
SWISS-MODEL
PDB Chain
ModBase
SCOP Domain

PublicationsHelp
1. Kelly KO, Deutscher MP.
Characterization of Escherichia coli RNase PH.
J. Biol. Chem. 267 17153-8 1992 [PubMed: 1512253]
http://intl.jbc.org/cgi/reprint/267/24/17153.pdf
2. McDowall J.
Protein of the Month - RNA Exosomes.
2007

Additional ReadingHelp
Choi JM, Park EY, Kim JH, Chang SK, Cho Y.
Probing the functional importance of the hexameric ring structure of RNase PH.
J. Biol. Chem. 279 2004 755-64 [PubMed: 14573594]
http://dx.doi.org/10.1074/jbc.M309628200
Harlow LS, Kadziola A, Jensen KF, Larsen S.
Crystal structure of the phosphorolytic exoribonuclease RNase PH from Bacillus subtilis and implications for its quaternary structure and tRNA binding.
Protein Sci. 13 2004 668-77 [PubMed: 14767080]
http://dx.doi.org/10.1110/ps.03477004
Ishii R, Nureki O, Yokoyama S.
Crystal structure of the tRNA processing enzyme RNase PH from Aquifex aeolicus.
J. Biol. Chem. 278 2003 32397-404 [PubMed: 12746447]
http://dx.doi.org/10.1074/jbc.M300639200
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InterPro 23.1