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InterPro: IPR018136 Aconitase family, 4Fe-4S cluster binding site
Protein matches
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UniProtKB Matches: 3943 proteins |
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Accession
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IPR018136 Aconitase_4Fe-4S_BS |
Type
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Binding_site |
Signatures
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InterPro Relationships
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Found in
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IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha
IPR004406 Aconitase B, bacterial
IPR004418 Homoaconitase, mitochondrial
IPR004430 3-isopropylmalate dehydratase, large subunit region
IPR006248 Aconitase, mitochondrial-like
IPR006249 Aconitase/iron regulatory protein 2
IPR006250 Aconitase, putative
IPR006251 Homoaconitase/3-isopropylmalate dehydratase, large subunit, subgroup
IPR011823 3-isopropylmalate dehydratase, large subunit, prokaryotic
IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic
IPR012235 3-isopropylmalate dehydratase, fused small/large subunit
IPR015930 Aconitase B, iron-sulphur-binding, bacterial
IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3
IPR015934 Aconitase/Iron regulatory protein 2/2-methylisocitrate dehydratase
IPR015936 Homoaconitase/3-isopropylmalate dehydratase, small/large subunit
IPR015937 Aconitase-like core
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InterPro annotation
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Entry Details in BioMart
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Abstract
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Aconitase (aconitate hydratase) [1] is the enzyme from the tricarboxylic acid cycle that catalyzes the reversible isomerization of citrate and isocitrate. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulphur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. It has been shown that the aconitase family also contains the following proteins:
- Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA.
- 3-isopropylmalate dehydratase (EC:4.2.1.33) (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine.
- Homoaconitase (EC:4.2.1.36) (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
- Esherichia coli protein YbhJ.
The signatures in this entry, identify the cysteine residues involved in the binding of the 4Fe-4S iron-sulphur cluster.
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Structural links
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Database links
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Example proteins
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P07264 3-isopropylmalate dehydratase
P21399 Cytoplasmic aconitate hydratase
P28271 Cytoplasmic aconitate hydratase
P34455 Probable aconitate hydratase, mitochondrial
Q42560 Aconitate hydratase 1
More proteins
Example Proteins Key
| InterPro entry accession number/name and structure databases |
Colour code |
| IPR015936 |
Homoaconitase/3-isopropylmalate dehydratase, small/large subunit |
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| IPR015934 |
Aconitase/Iron regulatory protein 2/2-methylisocitrate dehydratase |
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| IPR015928 |
Aconitase/3-isopropylmalate dehydratase, swivel |
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| IPR015937 |
Aconitase-like core |
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| IPR000573 |
Aconitase A/isopropylmalate dehydratase small subunit, swivel |
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| IPR006248 |
Aconitase, mitochondrial-like |
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| IPR001030 |
Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha |
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| IPR006249 |
Aconitase/iron regulatory protein 2 |
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| IPR004430 |
3-isopropylmalate dehydratase, large subunit region |
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| IPR004431 |
3-isopropylmalate dehydratase, small subunit |
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| IPR015931 |
Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 |
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| IPR015932 |
Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 |
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| IPR012235 |
3-isopropylmalate dehydratase, fused small/large subunit |
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| IPR018136 |
Aconitase family, 4Fe-4S cluster binding site |
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PDB Chain |
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ModBase |
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SWISS-MODEL |
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SCOP Domain |
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Additional Reading
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Williams CH, Stillman TJ, Barynin VV, Sedelnikova SE, Tang Y, Green J, Guest JR, Artymiuk PJ.
E. coli aconitase B structure reveals a HEAT-like domain with implications for protein-protein recognition.
Nat. Struct. Biol. 9 2002 447-52
[PubMed: 11992126]
http://dx.doi.org/10.1038/nsb801
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Dupuy J, Volbeda A, Carpentier P, Darnault C, Moulis JM, Fontecilla-Camps JC.
Crystal structure of human iron regulatory protein 1 as cytosolic aconitase.
Structure 14 2006 129-39
[PubMed: 16407072]
http://dx.doi.org/10.1016/j.str.2005.09.009
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Lauble H, Kennedy MC, Emptage MH, Beinert H, Stout CD.
The reaction of fluorocitrate with aconitase and the crystal structure of the enzyme-inhibitor complex.
Proc. Natl. Acad. Sci. U.S.A. 93 1996 13699-703
[PubMed: 8942997]
http://dx.doi.org/10.1073/pnas.93.24.13699
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Lauble H, Stout CD.
Steric and conformational features of the aconitase mechanism.
Proteins 22 1995 1-11
[PubMed: 7675781]
http://dx.doi.org/10.1002/prot.340220102
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Lloyd SJ, Lauble H, Prasad GS, Stout CD.
The mechanism of aconitase: 1.8 A resolution crystal structure of the S642a:citrate complex.
Protein Sci. 8 1999 2655-62
[PubMed: 10631981]
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=EBI&pubmedid=10631981
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InterPro 24.0
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