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InterPro: IPR018136 Aconitase family, 4Fe-4S cluster binding site

Protein matchesHelp
UniProtKB
Matches:
3943 proteins
AccessionHelp IPR018136 Aconitase_4Fe-4S_BS
TypeHelp Binding_site
SignaturesHelp
InterPro RelationshipsHelp
Found in IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha
IPR004406 Aconitase B, bacterial
IPR004418 Homoaconitase, mitochondrial
IPR004430 3-isopropylmalate dehydratase, large subunit region
IPR006248 Aconitase, mitochondrial-like
IPR006249 Aconitase/iron regulatory protein 2
IPR006250 Aconitase, putative
IPR006251 Homoaconitase/3-isopropylmalate dehydratase, large subunit, subgroup
IPR011823 3-isopropylmalate dehydratase, large subunit, prokaryotic
IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic
IPR012235 3-isopropylmalate dehydratase, fused small/large subunit
IPR015930 Aconitase B, iron-sulphur-binding, bacterial
IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3
IPR015934 Aconitase/Iron regulatory protein 2/2-methylisocitrate dehydratase
IPR015936 Homoaconitase/3-isopropylmalate dehydratase, small/large subunit
IPR015937 Aconitase-like core
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Aconitase (aconitate hydratase) [1] is the enzyme from the tricarboxylic acid cycle that catalyzes the reversible isomerization of citrate and isocitrate. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulphur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. It has been shown that the aconitase family also contains the following proteins:

  • Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA.
  • 3-isopropylmalate dehydratase (EC:4.2.1.33) (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine.
  • Homoaconitase (EC:4.2.1.36) (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
  • Esherichia coli protein YbhJ.

The signatures in this entry, identify the cysteine residues involved in the binding of the 4Fe-4S iron-sulphur cluster.

Structural linksHelp
SCOP: c.83.1.1
CATH: 3.30.499.10
Database linksHelp
Enzyme: EC:4.2.1.33

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR018136 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
P07264 3-isopropylmalate dehydratase

P21399 Cytoplasmic aconitate hydratase

P28271 Cytoplasmic aconitate hydratase

P34455 Probable aconitate hydratase, mitochondrial

Q42560 Aconitate hydratase 1

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR015936 Homoaconitase/3-isopropylmalate dehydratase, small/large subunit
IPR015934 Aconitase/Iron regulatory protein 2/2-methylisocitrate dehydratase
IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel
IPR015937 Aconitase-like core
IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel
IPR006248 Aconitase, mitochondrial-like
IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha
IPR006249 Aconitase/iron regulatory protein 2
IPR004430 3-isopropylmalate dehydratase, large subunit region
IPR004431 3-isopropylmalate dehydratase, small subunit
IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3
IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2
IPR012235 3-isopropylmalate dehydratase, fused small/large subunit
IPR018136 Aconitase family, 4Fe-4S cluster binding site
PDB Chain
ModBase
SWISS-MODEL
SCOP Domain

PublicationsHelp
1. Gruer MJ, Artymiuk PJ, Guest JR.
The aconitase family: three structural variations on a common theme.
Trends Biochem. Sci. 22 3-6 1997 [PubMed: 9020582]
http://dx.doi.org/10.1016/S0968-0004(96)10069-4

Additional ReadingHelp
Williams CH, Stillman TJ, Barynin VV, Sedelnikova SE, Tang Y, Green J, Guest JR, Artymiuk PJ.
E. coli aconitase B structure reveals a HEAT-like domain with implications for protein-protein recognition.
Nat. Struct. Biol. 9 2002 447-52 [PubMed: 11992126]
http://dx.doi.org/10.1038/nsb801
Dupuy J, Volbeda A, Carpentier P, Darnault C, Moulis JM, Fontecilla-Camps JC.
Crystal structure of human iron regulatory protein 1 as cytosolic aconitase.
Structure 14 2006 129-39 [PubMed: 16407072]
http://dx.doi.org/10.1016/j.str.2005.09.009
Lauble H, Kennedy MC, Emptage MH, Beinert H, Stout CD.
The reaction of fluorocitrate with aconitase and the crystal structure of the enzyme-inhibitor complex.
Proc. Natl. Acad. Sci. U.S.A. 93 1996 13699-703 [PubMed: 8942997]
http://dx.doi.org/10.1073/pnas.93.24.13699
Lauble H, Stout CD.
Steric and conformational features of the aconitase mechanism.
Proteins 22 1995 1-11 [PubMed: 7675781]
http://dx.doi.org/10.1002/prot.340220102
Lloyd SJ, Lauble H, Prasad GS, Stout CD.
The mechanism of aconitase: 1.8 A resolution crystal structure of the S642a:citrate complex.
Protein Sci. 8 1999 2655-62 [PubMed: 10631981]
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=EBI&pubmedid=10631981
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