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InterPro: IPR018120 Glycoside hydrolase, family 1, active site

Protein matchesHelp
UniProtKB
Matches:
2933 proteins
AccessionHelp IPR018120 Glyco_hydro_1_AS
TypeHelp Active_site
SignaturesHelp
InterPro RelationshipsHelp
Found in IPR001360 Glycoside hydrolase, family 1
IPR005928 6-phospho-beta-galactosidase
IPR013781 Glycoside hydrolase, subgroup, catalytic core
IPR017736 Glycoside hydrolase, family 1, beta-glucosidase
IPR017853 Glycoside hydrolase, catalytic core
GO Term annotationHelp
Process GO:0005975 carbohydrate metabolic process
Function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Glycoside hydrolase family 1 GH1 comprises enzymes with a number of known activities; beta-glucosidase (EC:3.2.1.21); beta-galactosidase (EC:3.2.1.23); 6-phospho-beta-galactosidase (EC:3.2.1.85); 6-phospho-beta-glucosidase (EC:3.2.1.86); lactase-phlorizin hydrolase (EC:3.2.1.62), (EC:3.2.1.108); beta-mannosidase (EC:3.2.1.25); myrosinase (EC:3.2.1.147).

One of the conserved regions in these enzymes is centred on a conserved glutamic acid residue which has been shown in the beta-glucosidase from Agrobacterium, to be directly involved in glycosidic bond cleavage by acting as a nucleophile. We have used this region as a signature pattern. As a second signature pattern we selected a conserved region, found in the N-terminal extremity of these enzymes, this region also contains a glutamic acid residue. This pattern will pick up the last two domains of LPH; the first two domains, which are removed from the LPH precursor by proteolytic processing, have lost the active site glutamate and may therefore be inactive [1].

Structural linksHelp
PDB - click here
SCOP: c.1.8.4
CATH: 3.20.20.80
Database linksHelp
Enzyme: EC:3.2.1

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR018120 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O35082 Klotho

P11546 6-phospho-beta-galactosidase

P37702 Myrosinase 1

Q8L7J2 Beta-glucosidase 6

Q9H227 Cytosolic beta-glucosidase

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR013781 Glycoside hydrolase, subgroup, catalytic core
IPR018120 Glycoside hydrolase, family 1, active site
IPR001360 Glycoside hydrolase, family 1
IPR005928 6-phospho-beta-galactosidase
IPR017853 Glycoside hydrolase, catalytic core
SWISS-MODEL
PDB Chain
ModBase
SCOP Domain
CATH Domain

PublicationsHelp
1. el Hassouni M, Henrissat B, Chippaux M, Barras F.
Nucleotide sequences of the arb genes, which control beta-glucoside utilization in Erwinia chrysanthemi: comparison with the Escherichia coli bgl operon and evidence for a new beta-glycohydrolase family including enzymes from eubacteria, archeabacteria, and humans.
J. Bacteriol. 174 765-77 1992 [PubMed: 1732212]
http://www.pubmedcentral.nih.gov/picrender.fcgi?tool=EBI&pubmedid=1732212&action=stream&blobtype=pdf

Additional ReadingHelp
Gloster TM, Madsen R, Davies GJ.
Structural basis for cyclophellitol inhibition of a beta-glucosidase.
Org. Biomol. Chem. 5 2007 444-6 [PubMed: 17252125]
http://dx.doi.org/10.1039/b616590g
Aguilar M, Gloster TM, Garcia-Moreno MI, Ortiz Mellet C, Davies GJ, Llebaria A, Casas J, Egido-Gabas M, Garcia Fernandez JM.
Molecular basis for beta-glucosidase inhibition by ring-modified calystegine analogues.
Chembiochem 9 2008 2612-8 [PubMed: 18833549]
http://dx.doi.org/10.1002/cbic.200800451
Isorna P, Polaina J, Latorre-Garcia L, Canada FJ, Gonzalez B, Sanz-Aparicio J.
Crystal structures of Paenibacillus polymyxa beta-glucosidase B complexes reveal the molecular basis of substrate specificity and give new insights into the catalytic machinery of family I glycosidases.
J. Mol. Biol. 371 2007 1204-18 [PubMed: 17585934]
http://dx.doi.org/10.1016/j.jmb.2007.05.082
Nijikken Y, Tsukada T, Igarashi K, Samejima M, Wakagi T, Shoun H, Fushinobu S.
Crystal structure of intracellular family 1 beta-glucosidase BGL1A from the basidiomycete Phanerochaete chrysosporium.
FEBS Lett. 581 2007 1514-20 [PubMed: 17376440]
http://dx.doi.org/10.1016/j.febslet.2007.03.009
Gloster TM, Meloncelli P, Stick RV, Zechel D, Vasella A, Davies GJ.
Glycosidase inhibition: an assessment of the binding of 18 putative transition-state mimics.
J. Am. Chem. Soc. 129 2007 2345-54 [PubMed: 17279749]
http://dx.doi.org/10.1021/ja066961g
Henrissat B.
Sequence homology between a beta-galactosidase and some beta-glucosidases.
Protein Seq. Data Anal. 4 1991 61-2 [PubMed: 1924272]
Henrissat B.
A classification of glycosyl hydrolases based on amino acid sequence similarities.
Biochem. J. 280 ( Pt 2) 1991 309-16 [PubMed: 1747104]
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=EBI&pubmedid=1747104
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InterPro 23.1