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InterPro: IPR017941 Rieske [2Fe-2S] iron-sulphur domain

Protein matchesHelp
UniProtKB
Matches:
7691 proteins
AccessionHelp IPR017941 Rieske_2Fe-2S
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Children IPR005805 Rieske iron-sulphur protein, C-terminal
Found in IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit
IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit
IPR012747 MocE Rieske [2Fe-2S]
IPR012748 Nitrite reductase [NAD(P)H] large subunit, NirD
IPR014067 Arsenite oxidase, small subunit
IPR014349 Rieske iron-sulphur protein
IPR017586 Rieske iron-sulphur protein SoxL2
IPR017638 Anthranilate 1,2-dioxygenase, large subunit
IPR017639 Benzoate 1,2-dioxygenase, large subunit
IPR020875 3-phenylpropionate/cinnamic acid dioxygenase, alpha subunit
Contains IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site
GO Term annotationHelp
Process GO:0055114 oxidation reduction
Function GO:0016491 oxidoreductase activity
GO:0051537 2 iron, 2 sulfur cluster binding
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [1, 2].

The structure of several Rieske domains has been solved [3]. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster.

Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems:

  • The Rieske protein of the Ubiquinol-cytochrome c reductase (EC:1.10.2.2) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c.
  • The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (EC:1.10.99.1) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f.
  • Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol.
  • Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit.
  • Bacterial toluene monoxygenase.
  • Bacterial biphenyl dioxygenase.

Structural linksHelp
PDB - click here
Database linksHelp
Enzyme: EC:1
InteractionsHelp
This domain has been experimentally proven to be involved in Protein:Protein interactions.
Representative data is shown with the following example proteins:

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR017941 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
P08067 Cytochrome b-c1 complex subunit Rieske, mitochondrial

P0C7P4 Cytochrome b-c1 complex subunit Rieske-like protein 1

Q69S39 Cytochrome b6-f complex iron-sulfur subunit, chloroplastic

Q8K2P6 Rieske domain-containing protein

Q9FYC2 Pheophorbide a oxygenase, chloroplastic

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR014909 Cytochrome b6-f complex Fe-S subunit
IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit
IPR017941 Rieske [2Fe-2S] iron-sulphur domain
IPR004192 Ubiquinol cytochrome reductase, transmembrane domain
IPR013626 Pheophorbide a oxygenase
IPR005805 Rieske iron-sulphur protein, C-terminal
IPR011070 Globular protein, non-globular alpha/beta subunit
IPR015248 Ubiquinol-cytochrome c reductase 8kDa, N-terminal
IPR014349 Rieske iron-sulphur protein
PDB Chain
ModBase
CATH Domain
SWISS-MODEL
SCOP Domain

PublicationsHelp
1. Ferraro DJ, Gakhar L, Ramaswamy S.
Rieske business: structure-function of Rieske non-heme oxygenases.
Biochem. Biophys. Res. Commun. 338 175-90 2005 [PubMed: 16168954]
http://dx.doi.org/10.1016/j.bbrc.2005.08.222
2. Schneider D, Schmidt CL.
Multiple Rieske proteins in prokaryotes: where and why?
Biochim. Biophys. Acta 1710 1-12 2005 [PubMed: 16271700]
3. Iwata S, Saynovits M, Link TA, Michel H.
Structure of a water soluble fragment of the 'Rieske' iron-sulfur protein of the bovine heart mitochondrial cytochrome bc1 complex determined by MAD phasing at 1.5 A resolution.
Structure 4 567-79 1996 [PubMed: 8736555]
http://dx.doi.org/10.1016/S0969-2126(96)00062-7

Additional ReadingHelp
Levin EJ, Kondrashov DA, Wesenberg GE, Phillips GN Jr.
Ensemble refinement of protein crystal structures: validation and application.
Structure 15 2007 1040-52 [PubMed: 17850744]
http://dx.doi.org/10.1016/j.str.2007.06.019
Huang JT, Struck F, Matzinger DF, Levings CS 3rd.
Functional analysis in yeast of cDNA coding for the mitochondrial Rieske iron-sulfur protein of higher plants.
Proc. Natl. Acad. Sci. U.S.A. 88 1991 10716-20 [PubMed: 1961737]
http://ukpmc.ac.uk/picrender.cgi?tool=EBI&pubmedid=1961737&action=stream&blobtype=pdf
Yamashita E, Zhang H, Cramer WA.
Structure of the cytochrome b6f complex: quinone analogue inhibitors as ligands of heme cn.
J. Mol. Biol. 370 2007 39-52 [PubMed: 17498743]
http://dx.doi.org/10.1016/j.jmb.2007.04.011
Solmaz SR, Hunte C.
Structure of complex III with bound cytochrome c in reduced state and definition of a minimal core interface for electron transfer.
J. Biol. Chem. 283 2008 17542-9 [PubMed: 18390544]
http://dx.doi.org/10.1074/jbc.M710126200
Brandt U, Yu L, Yu CA, Trumpower BL.
The mitochondrial targeting presequence of the Rieske iron-sulfur protein is processed in a single step after insertion into the cytochrome bc1 complex in mammals and retained as a subunit in the complex.
J. Biol. Chem. 268 1993 8387-90 [PubMed: 8386158]
http://intl.jbc.org/cgi/content/abstract/268/12/8387
Kolling DJ, Brunzelle JS, Lhee S, Crofts AR, Nair SK.
Atomic resolution structures of rieske iron-sulfur protein: role of hydrogen bonds in tuning the redox potential of iron-sulfur clusters.
Structure 15 2007 29-38 [PubMed: 17223530]
http://dx.doi.org/10.1016/j.str.2006.11.012
Esser L, Elberry M, Zhou F, Yu CA, Yu L, Xia D.
Inhibitor-complexed structures of the cytochrome bc1 from the photosynthetic bacterium Rhodobacter sphaeroides.
J. Biol. Chem. 283 2008 2846-57 [PubMed: 18039651]
http://dx.doi.org/10.1074/jbc.M708608200
Gupta R, Mould RM, He Z, Luan S.
A chloroplast FKBP interacts with and affects the accumulation of Rieske subunit of cytochrome bf complex.
Proc. Natl. Acad. Sci. U.S.A. 99 2002 15806-11 [PubMed: 12424338]
http://dx.doi.org/10.1073/pnas.222550399
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InterPro 23.1