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InterPro: IPR017925 Dihydrofolate reductase conserved site

Protein matchesHelp
UniProtKB
Matches:
1695 proteins
AccessionHelp IPR017925 Dihydrofolate_reductase_CS
TypeHelp Conserved_site
SignaturesHelp
InterPro RelationshipsHelp
Found in IPR001796 Dihydrofolate reductase domain
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Dihydrofolate reductase (DHFR) (EC:1.5.1.3) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [1], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood [2].

Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar [3]. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [4] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself [5].

This entry covers the region in the N-terminal part of the DHFR domain, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown to be involved in the binding of substrate by the enzyme [6].

Structural linksHelp
PDB - click here
SCOP: c.71.1.1
CATH: 3.40.430.10
Database linksHelp
Enzyme: EC:1.5.1.3

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR017925 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
P00374 Dihydrofolate reductase

P00375 Dihydrofolate reductase

P07807 Dihydrofolate reductase

P17719 Dihydrofolate reductase

Q93341 Putative dihydrofolate reductase

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR001796 Dihydrofolate reductase domain
IPR017925 Dihydrofolate reductase conserved site
IPR012259 Dihydrofolate reductase
SWISS-MODEL
PDB Chain
ModBase
CATH Domain
SCOP Domain

PublicationsHelp
1. Trimble JJ, Murthy SC, Bakker A, Grassmann R, Desrosiers RC.
A gene for dihydrofolate reductase in a herpesvirus.
Science 239 1145-7 1988 [PubMed: 2830673]
http://www.sciencemag.org/cgi/content/abstract/239/4844/1145
2. Oefner C, D'Arcy A, Winkler FK.
Crystal structure of human dihydrofolate reductase complexed with folate.
Eur. J. Biochem. 174 377-85 1988 [PubMed: 3383852]
http://dx.doi.org/10.1111/j.1432-1033.1988.tb14108.x
3. Smith SL, Patrick P, Stone D, Phillips AW, Burchall JJ.
Porcine liver dihydrofolate reductase. Purification, properties, and amino acid sequence.
J. Biol. Chem. 254 11475-84 1979 [PubMed: 500653]
http://intl.jbc.org/cgi/content/abstract/254/22/11475
4. Bolin JT, Filman DJ, Matthews DA, Hamlin RC, Kraut J.
Crystal structures of Escherichia coli and Lactobacillus casei dihydrofolate reductase refined at 1.7 A resolution. I. General features and binding of methotrexate.
J. Biol. Chem. 257 13650-62 1982 [PubMed: 6815178]
http://intl.jbc.org/cgi/reprint/257/22/13650.pdf
5. Cowman AF, Lew AM.
Antifolate drug selection results in duplication and rearrangement of chromosome 7 in Plasmodium chabaudi.
Mol. Cell. Biol. 9 5182-8 1989 [PubMed: 2601715]
http://ukpmc.ac.uk/articlerender.cgi?tool=EBI&pubmedid=2601715
6. Matthews DA, Bolin JT, Burridge JM, Filman DJ, Volz KW, Kraut J.
Dihydrofolate reductase. The stereochemistry of inhibitor selectivity.
J. Biol. Chem. 260 392-9 1985 [PubMed: 3880743]
http://intl.jbc.org/cgi/content/abstract/260/1/392

Additional ReadingHelp
Reynolds RC, Campbell SR, Fairchild RG, Kisliuk RL, Micca PL, Queener SF, Riordan JM, Sedwick WD, Waud WR, Leung AK, Dixon RW, Suling WJ, Borhani DW.
Novel boron-containing, nonclassical antifolates: synthesis and preliminary biological and structural evaluation.
J. Med. Chem. 50 2007 3283-9 [PubMed: 17569517]
http://dx.doi.org/10.1021/jm0701977
Bennett BC, Xu H, Simmerman RF, Lee RE, Dealwis CG.
Crystal structure of the anthrax drug target, Bacillus anthracis dihydrofolate reductase.
J. Med. Chem. 50 2007 4374-81 [PubMed: 17696333]
http://dx.doi.org/10.1021/jm070319v
Binbuga B, Boroujerdi AF, Young JK.
Structure in an extreme environment: NMR at high salt.
Protein Sci. 16 2007 1783-7 [PubMed: 17656587]
http://dx.doi.org/10.1110/ps.072950407
Doan LT, Martucci WE, Vargo MA, Atreya CE, Anderson KS.
Nonconserved residues Ala287 and Ser290 of the Cryptosporidium hominis thymidylate synthase domain facilitate its rapid rate of catalysis.
Biochemistry 46 2007 8379-91 [PubMed: 17580969]
http://dx.doi.org/10.1021/bi700531r
Summerfield RL, Daigle DM, Mayer S, Mallik D, Hughes DW, Jackson SG, Sulek M, Organ MG, Brown ED, Junop MS.
A 2.13 A structure of E. coli dihydrofolate reductase bound to a novel competitive inhibitor reveals a new binding surface involving the M20 loop region.
J. Med. Chem. 49 2006 6977-86 [PubMed: 17125251]
http://dx.doi.org/10.1021/jm060570v
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InterPro 23.1