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InterPro: IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site

Protein matchesHelp
UniProtKB
Matches:
1661 proteins
AccessionHelp IPR017440 Cit_synth/succinyl-CoA_lig_AS
TypeHelp Active_site
SignaturesHelp
InterPro RelationshipsHelp
Found in IPR005810 Succinyl-CoA ligase, alpha subunit
IPR005811 ATP-citrate lyase/succinyl-CoA ligase
IPR014608 ATP-citrate synthase
IPR016102 Succinyl-CoA synthetase-like
GO Term annotationHelp
Process GO:0008152 metabolic process
Function GO:0003824 catalytic activity
GO:0003878 ATP citrate synthase activity
GO:0004775 succinate-CoA ligase (ADP-forming) activity
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

There are four different enzymes that share a similar catalytic mechanism which involves the phosphorylation by ATP (or GTP) of a specific histidine residue in the active site. These enzymes are: ATP citrate-lyase (EC:4.1.3.8) [1], the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues, catalyzes the formation of acetyl-CoA and oxaloacetate from citrate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. ATP-citrate lyase is a tetramer of identical subunits; Succinyl-CoA ligase (GDP-forming) (EC:6.2.1.4) [2] is a mitochondrial enzyme that catalyzes the substrate level phosphorylation step of the tricarboxylic acid cycle: the formation of succinyl-CoA from succinate with a concomitant hydrolysis of GTP to GDP and phosphate. This enzyme is a dimer composed of an alpha and a beta subunits; Succinyl-CoA ligase (ADP-forming) (EC:6.2.1.5) [3] is a bacterial enzyme that during aerobic metabolism functions in the citric acid cycle, coupling the hydrolysis of succinyl-CoA to the synthesis of ATP. It can also function in the other direction for anabolic purposes. This enzyme is a tetramer composed of two alpha and two beta subunits; and Malate-CoA ligase (EC:6.2.1.9) (malyl-CoA synthetase) [4], is a bacterial enzyme that forms malyl-CoA from malate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. Malate-CoA ligase is composed of two different subunits.

This pattern, which is located some 50 residues to the C-terminal of IPR005810, includes the active site phosphorylated histidine residue.

Structural linksHelp
SCOP: c.23.4.1
CATH: 3.40.50.261
Database linksHelp
PDBe-motif: PS00399
Enzyme: EC:6.2.1
PROSITE doc: PDOC00335

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR017440 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
P53396 ATP-citrate synthase

P53585 Probable ATP-citrate synthase

P53598 Succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial

Q91V92 ATP-citrate synthase

Q94522 Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR013816 ATP-grasp fold, subdomain 2
IPR016141 Citrate synthase-like, core
IPR016143 Citrate synthase-like, small alpha subdomain
IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site
IPR014608 ATP-citrate synthase
IPR016102 Succinyl-CoA synthetase-like
IPR005810 Succinyl-CoA ligase, alpha subunit
IPR005811 ATP-citrate lyase/succinyl-CoA ligase
IPR002020 Citrate synthase-like
IPR016040 NAD(P)-binding domain
IPR003781 CoA-binding
IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type
IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site
ModBase
SWISS-MODEL

PublicationsHelp
1. Elshourbagy NA, Near JC, Kmetz PJ, Wells TN, Groot PH, Saxty BA, Hughes SA, Franklin M, Gloger IS.
Cloning and expression of a human ATP-citrate lyase cDNA.
Eur. J. Biochem. 204 491-9 1992 [PubMed: 1371749]
http://dx.doi.org/10.1111/j.1432-1033.1992.tb16659.x
2. Bailey DL, Wolodko WT, Bridger WA.
Cloning, characterization, and expression of the beta subunit of pig heart succinyl-CoA synthetase.
Protein Sci. 2 1255-62 1993 [PubMed: 8401211]
http://ukpmc.ac.uk/picrender.cgi?tool=EBI&pubmedid=8401211&action=stream&blobtype=pdf
3. Buck D, Spencer ME, Guest JR.
Primary structure of the succinyl-CoA synthetase of Escherichia coli.
Biochemistry 24 6245-52 1985 [PubMed: 3002435]
http://dx.doi.org/10.1021/bi00343a031
4. Chistoserdova LV, Lidstrom ME.
Genetics of the serine cycle in Methylobacterium extorquens AM1: identification, sequence, and mutation of three new genes involved in C1 assimilation, orf4, mtkA, and mtkB.
J. Bacteriol. 176 7398-404 1994 [PubMed: 7961516]
http://www.pubmedcentral.nih.gov/picrender.fcgi?tool=EBI&pubmedid=7961516&action=stream&blobtype=pdf

Additional ReadingHelp
Joyce MA, Fraser ME, James MN, Bridger WA, Wolodko WT.
ADP-binding site of Escherichia coli succinyl-CoA synthetase revealed by x-ray crystallography.
Biochemistry 39 2000 17-25 [PubMed: 10625475]
http://dx.doi.org/10.1021/bi991696f
Hidber E, Brownie ER, Hayakawa K, Fraser ME.
Participation of Cys123alpha of Escherichia coli succinyl-CoA synthetase in catalysis.
Acta Crystallogr. D Biol. Crystallogr. 63 2007 876-84 [PubMed: 17642514]
http://dx.doi.org/10.1107/S0907444907029319
Fraser ME, Joyce MA, Ryan DG, Wolodko WT.
Two glutamate residues, Glu 208 alpha and Glu 197 beta, are crucial for phosphorylation and dephosphorylation of the active-site histidine residue in succinyl-CoA synthetase.
Biochemistry 41 2002 537-46 [PubMed: 11781092]
http://dx.doi.org/10.1021/bi011518y
Fraser ME, Hayakawa K, Hume MS, Ryan DG, Brownie ER.
Interactions of GTP with the ATP-grasp domain of GTP-specific succinyl-CoA synthetase.
J. Biol. Chem. 281 2006 11058-65 [PubMed: 16481318]
http://dx.doi.org/10.1074/jbc.M511785200
Fraser ME, James MN, Bridger WA, Wolodko WT.
Phosphorylated and dephosphorylated structures of pig heart, GTP-specific succinyl-CoA synthetase.
J. Mol. Biol. 299 2000 1325-39 [PubMed: 10873456]
http://dx.doi.org/10.1006/jmbi.2000.3807
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