spacer
spacer

Jump to: InterProScan Databases Documentation FTP site Help Advanced search

InterPro: IPR016211 Glutamate/phenylalanine/leucine/valine dehydrogenase, bacterial/archaeal

Protein matchesHelp
UniProtKB
Matches:
391 proteins
AccessionHelp IPR016211 Glu/Phe/Leu/Val_DH_bac/arc
TypeHelp Family
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase
Contains IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal
IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain
GO Term annotationHelp
Process GO:0055114 oxidation reduction
Function GO:0016639 oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.

Glutamate dehydrogenases (EC:1.4.1.2, EC:1.4.1.3, and EC:1.4.1.4) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [1, 2]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [3] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids [4].

Leucine dehydrogenase (EC:1.4.1.9) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues [5]. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle.

Phenylalanine dehydrogenase (EC:1.4.1.20) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate [6].

Valine dehydrogenase (EC:1.4.1.8) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate [7].

This group represents glutamate/phenylalanine/leucine/valine dehydrogenases found in a number of bacteria and archaea.

Structural linksHelp
SCOP: c.2.1.7 , c.58.1.1
Database linksHelp
Enzyme: EC:1.4.1

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR016211 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O69056 Valine dehydrogenase

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR016211 Glutamate/phenylalanine/leucine/valine dehydrogenase, bacterial/archaeal
IPR016040 NAD(P)-binding domain
IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase
IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain
IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal
SWISS-MODEL

PublicationsHelp
1. Britton KL, Baker PJ, Rice DW, Stillman TJ.
Structural relationship between the hexameric and tetrameric family of glutamate dehydrogenases.
Eur. J. Biochem. 209 851-9 1992 [PubMed: 1358610]
http://dx.doi.org/10.1111/j.1432-1033.1992.tb17357.x
2. Benachenhou-Lahfa N, Forterre P, Labedan B.
Evolution of glutamate dehydrogenase genes: evidence for two paralogous protein families and unusual branching patterns of the archaebacteria in the universal tree of life.
J. Mol. Evol. 36 335-46 1993 [PubMed: 8315654]
http://dx.doi.org/10.1007/BF00182181
3. Moye WS, Amuro N, Rao JK, Zalkin H.
Nucleotide sequence of yeast GDH1 encoding nicotinamide adenine dinucleotide phosphate-dependent glutamate dehydrogenase.
J. Biol. Chem. 260 8502-8 1985 [PubMed: 2989290]
http://intl.jbc.org/cgi/reprint/260/14/8502.pdf
4. Mavrothalassitis G, Tzimagiorgis G, Mitsialis A, Zannis V, Plaitakis A, Papamatheakis J, Moschonas N.
Isolation and characterization of cDNA clones encoding human liver glutamate dehydrogenase: evidence for a small gene family.
Proc. Natl. Acad. Sci. U.S.A. 85 3494-8 1988 [PubMed: 3368458]
http://ukpmc.ac.uk/articlerender.cgi?tool=EBI&pubmedid=3368458
5. Nagata S, Tanizawa K, Esaki N, Sakamoto Y, Ohshima T, Tanaka H, Soda K.
Gene cloning and sequence determination of leucine dehydrogenase from Bacillus stearothermophilus and structural comparison with other NAD(P)+-dependent dehydrogenases.
Biochemistry 27 9056-62 1988 [PubMed: 3069133]
http://dx.doi.org/10.1021/bi00425a026
6. Takada H, Yoshimura T, Ohshima T, Esaki N, Soda K.
Thermostable phenylalanine dehydrogenase of Thermoactinomyces intermedius: cloning, expression, and sequencing of its gene.
J. Biochem. 109 371-6 1991 [PubMed: 1880121]
http://jb.oxfordjournals.org/cgi/content/abstract/109/3/371
7. Tang L, Hutchinson CR.
Sequence, transcriptional, and functional analyses of the valine (branched-chain amino acid) dehydrogenase gene of Streptomyces coelicolor.
J. Bacteriol. 175 4176-85 1993 [PubMed: 8320231]
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=EBI&pubmedid=8320231

Additional ReadingHelp
Vanhooke JL, Thoden JB, Brunhuber NM, Blanchard JS, Holden HM.
Phenylalanine dehydrogenase from Rhodococcus sp. M4: high-resolution X-ray analyses of inhibitory ternary complexes reveal key features in the oxidative deamination mechanism.
Biochemistry 38 1999 2326-39 [PubMed: 10029526]
http://dx.doi.org/10.1021/bi982244q
Baker PJ, Turnbull AP, Sedelnikova SE, Stillman TJ, Rice DW.
A role for quaternary structure in the substrate specificity of leucine dehydrogenase.
Structure 3 1995 693-705 [PubMed: 8591046]
http://dx.doi.org/10.1016/S0969-2126(01)00204-0
Brunhuber NM, Thoden JB, Blanchard JS, Vanhooke JL.
Rhodococcus L-phenylalanine dehydrogenase: kinetics, mechanism, and structural basis for catalytic specificity.
Biochemistry 39 2000 9174-87 [PubMed: 10924111]
http://dx.doi.org/10.1021/bi000494c
spacer
spacer
InterPro 23.1