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InterPro: IPR016211 Glutamate/phenylalanine/leucine/valine dehydrogenase, bacterial/archaeal
Protein matches
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UniProtKB Matches: 391 proteins |
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Accession
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IPR016211 Glu/Phe/Leu/Val_DH_bac/arc |
Type
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Family |
Signatures
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InterPro Relationships
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Parent
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IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase
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Contains
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IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal
IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain
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GO Term annotation
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Process
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GO:0055114 oxidation reduction
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Function
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GO:0016639 oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
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InterPro annotation
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Entry Details in BioMart
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Abstract
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Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.
Glutamate dehydrogenases (EC:1.4.1.2, EC:1.4.1.3, and EC:1.4.1.4) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [1, 2]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [3] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids [4].
Leucine dehydrogenase (EC:1.4.1.9) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues [5]. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle.
Phenylalanine dehydrogenase (EC:1.4.1.20) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate [6].
Valine dehydrogenase (EC:1.4.1.8) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate [7]. This group represents glutamate/phenylalanine/leucine/valine dehydrogenases found in a number of bacteria and archaea.
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Structural links
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Database links
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Publications
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1.
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Britton KL, Baker PJ, Rice DW, Stillman TJ.
Structural relationship between the hexameric and tetrameric family of glutamate dehydrogenases.
Eur. J. Biochem. 209 851-9 1992
[PubMed: 1358610]
http://dx.doi.org/10.1111/j.1432-1033.1992.tb17357.x
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2.
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Benachenhou-Lahfa N, Forterre P, Labedan B.
Evolution of glutamate dehydrogenase genes: evidence for two paralogous protein families and unusual branching patterns of the archaebacteria in the universal tree of life.
J. Mol. Evol. 36 335-46 1993
[PubMed: 8315654]
http://dx.doi.org/10.1007/BF00182181
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3.
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Moye WS, Amuro N, Rao JK, Zalkin H.
Nucleotide sequence of yeast GDH1 encoding nicotinamide adenine dinucleotide phosphate-dependent glutamate dehydrogenase.
J. Biol. Chem. 260 8502-8 1985
[PubMed: 2989290]
http://intl.jbc.org/cgi/reprint/260/14/8502.pdf
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4.
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Mavrothalassitis G, Tzimagiorgis G, Mitsialis A, Zannis V, Plaitakis A, Papamatheakis J, Moschonas N.
Isolation and characterization of cDNA clones encoding human liver glutamate dehydrogenase: evidence for a small gene family.
Proc. Natl. Acad. Sci. U.S.A. 85 3494-8 1988
[PubMed: 3368458]
http://ukpmc.ac.uk/articlerender.cgi?tool=EBI&pubmedid=3368458
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5.
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Nagata S, Tanizawa K, Esaki N, Sakamoto Y, Ohshima T, Tanaka H, Soda K.
Gene cloning and sequence determination of leucine dehydrogenase from Bacillus stearothermophilus and structural comparison with other NAD(P)+-dependent dehydrogenases.
Biochemistry 27 9056-62 1988
[PubMed: 3069133]
http://dx.doi.org/10.1021/bi00425a026
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6.
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Takada H, Yoshimura T, Ohshima T, Esaki N, Soda K.
Thermostable phenylalanine dehydrogenase of Thermoactinomyces intermedius: cloning, expression, and sequencing of its gene.
J. Biochem. 109 371-6 1991
[PubMed: 1880121]
http://jb.oxfordjournals.org/cgi/content/abstract/109/3/371
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7.
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Tang L, Hutchinson CR.
Sequence, transcriptional, and functional analyses of the valine (branched-chain amino acid) dehydrogenase gene of Streptomyces coelicolor.
J. Bacteriol. 175 4176-85 1993
[PubMed: 8320231]
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=EBI&pubmedid=8320231
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Additional Reading
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Vanhooke JL, Thoden JB, Brunhuber NM, Blanchard JS, Holden HM.
Phenylalanine dehydrogenase from Rhodococcus sp. M4: high-resolution X-ray analyses of inhibitory ternary complexes reveal key features in the oxidative deamination mechanism.
Biochemistry 38 1999 2326-39
[PubMed: 10029526]
http://dx.doi.org/10.1021/bi982244q
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Baker PJ, Turnbull AP, Sedelnikova SE, Stillman TJ, Rice DW.
A role for quaternary structure in the substrate specificity of leucine dehydrogenase.
Structure 3 1995 693-705
[PubMed: 8591046]
http://dx.doi.org/10.1016/S0969-2126(01)00204-0
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Brunhuber NM, Thoden JB, Blanchard JS, Vanhooke JL.
Rhodococcus L-phenylalanine dehydrogenase: kinetics, mechanism, and structural basis for catalytic specificity.
Biochemistry 39 2000 9174-87
[PubMed: 10924111]
http://dx.doi.org/10.1021/bi000494c
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InterPro 23.1
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