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InterPro: IPR016186 C-type lectin-like

Protein matchesHelp
UniProtKB
Matches:
4815 proteins
AccessionHelp IPR016186 C-type_lectin-like
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR016187 C-type lectin fold
Children IPR000538 Link
IPR001304 C-type lectin
IPR010515 Collagenase NC10/endostatin
IPR013117 Intimin, C-terminal
Contains IPR015097 Lung surfactant protein D coiled-coil trimerisation
IPR018378 C-type lectin, conserved site
GO Term annotationHelp
Function GO:0005488 binding
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Lectins occur in plants, animals, bacteria and viruses. Initially described for their carbohydrate-binding activity [1], they are now recognised as a more diverse group of proteins, some of which are involved in protein-protein, protein-lipid or protein-nucleic acid interactions [2]. There are at least twelve structural families of lectins, of which C-type (Ca+-dependent) lectins is one. C-type lectins can be further divided into seven subgroups based on additional non-lectin domains and gene structure: (I) hyalectans, (II) asialoglycoprotein receptors, (III) collectins, (IV) selectins, (V) NK group transmembrane receptors, (VI) macrophage mannose receptors, and (VII) simple (single domain) lectins [3].

This entry represents a structural domain found in C-type lectins, as well as in other proteins, including:

  • The C-terminal domain of invasin [4] and intimin [5].
  • Link domain, which includes the Link module of TSG-6 [6] (a hyaladherin with important roles in inflammation and ovulation) and the hyaluronan binding domain of CD44 (which contains extra N-terminal beta-strand and C-terminal beta-hairpin) [7].
  • Endostatin [8] and the endostatin domain of collagen alpha 1 (XV) [9], these domains being decorated with many insertions in the common fold.

Structural linksHelp
PDB - click here

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR016186 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O35206 Collagen alpha-1(XV) chain

O46197 Accessory gland protein Acp29AB

P05451 Lithostathine-1-alpha

P11922 Invasin

P34312 C-type lectin domain-containing protein 162

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR010515 Collagenase NC10/endostatin
IPR001791 Laminin G
IPR003535 Intimin bacterial adhesion mediator protein
IPR016187 C-type lectin fold
IPR016186 C-type lectin-like
IPR008964 Invasin/intimin cell-adhesion
IPR003990 Pancreatitis-associated protein
IPR013117 Intimin, C-terminal
IPR003344 Bacterial Ig-like, group 1
IPR018378 C-type lectin, conserved site
IPR001304 C-type lectin
IPR003129 Laminin G, thrombospondin-type, N-terminal
IPR008985 Concanavalin A-like lectin/glucanase
IPR008160 Collagen triple helix repeat
PDB Chain
ModBase
CATH Domain
SWISS-MODEL
SCOP Domain

PublicationsHelp
1. Sharon N, Lis H.
The structural basis for carbohydrate recognition by lectins.
Adv. Exp. Med. Biol. 491 1-16 2001 [PubMed: 14533786]
2. Kilpatrick DC.
Animal lectins: a historical introduction and overview.
Biochim. Biophys. Acta 1572 187-97 2002 [PubMed: 12223269]
http://dx.doi.org/10.1016/S0304-4165(02)00308-2
3. McGreal EP, Martinez-Pomares L, Gordon S.
Divergent roles for C-type lectins expressed by cells of the innate immune system.
Mol. Immunol. 41 1109-21 2004 [PubMed: 15476922]
http://dx.doi.org/10.1016/j.molimm.2004.06.013
4. Hamburger ZA, Brown MS, Isberg RR, Bjorkman PJ.
Crystal structure of invasin: a bacterial integrin-binding protein.
Science 286 291-5 1999 [PubMed: 10514372]
http://dx.doi.org/10.1126/science.286.5438.291
5. Luo Y, Frey EA, Pfuetzner RA, Creagh AL, Knoechel DG, Haynes CA, Finlay BB, Strynadka NC.
Crystal structure of enteropathogenic Escherichia coli intimin-receptor complex.
Nature 405 1073-7 2000 [PubMed: 10890451]
http://dx.doi.org/10.1038/35016618
6. Blundell CD, Mahoney DJ, Almond A, DeAngelis PL, Kahmann JD, Teriete P, Pickford AR, Campbell ID, Day AJ.
The link module from ovulation- and inflammation-associated protein TSG-6 changes conformation on hyaluronan binding.
J. Biol. Chem. 278 49261-70 2003 [PubMed: 12972412]
http://dx.doi.org/10.1074/jbc.M309623200
7. Teriete P, Banerji S, Noble M, Blundell CD, Wright AJ, Pickford AR, Lowe E, Mahoney DJ, Tammi MI, Kahmann JD, Campbell ID, Day AJ, Jackson DG.
Structure of the regulatory hyaluronan binding domain in the inflammatory leukocyte homing receptor CD44.
Mol. Cell 13 483-96 2004 [PubMed: 14992719]
http://dx.doi.org/10.1016/S1097-2765(04)00080-2
8. Ding YH, Javaherian K, Lo KM, Chopra R, Boehm T, Lanciotti J, Harris BA, Li Y, Shapiro R, Hohenester E, Timpl R, Folkman J, Wiley DC.
Zinc-dependent dimers observed in crystals of human endostatin.
Proc. Natl. Acad. Sci. U.S.A. 95 10443-8 1998 [PubMed: 9724722]
http://dx.doi.org/10.1073/pnas.95.18.10443
9. Sasaki T, Larsson H, Tisi D, Claesson-Welsh L, Hohenester E, Timpl R.
Endostatins derived from collagens XV and XVIII differ in structural and binding properties, tissue distribution and anti-angiogenic activity.
J. Mol. Biol. 301 1179-90 2000 [PubMed: 10966814]
http://dx.doi.org/10.1006/jmbi.2000.3996

Additional ReadingHelp
Wang L, Brauner JW, Mao G, Crouch E, Seaton B, Head J, Smith K, Flach CR, Mendelsohn R.
Interaction of recombinant surfactant protein D with lipopolysaccharide: conformation and orientation of bound protein by IRRAS and simulations.
Biochemistry 47 2008 8103-13 [PubMed: 18620419]
http://dx.doi.org/10.1021/bi800626h
Wang H, Head J, Kosma P, Brade H, Muller-Loennies S, Sheikh S, McDonald B, Smith K, Cafarella T, Seaton B, Crouch E.
Recognition of heptoses and the inner core of bacterial lipopolysaccharides by surfactant protein d.
Biochemistry 47 2008 710-20 [PubMed: 18092821]
http://dx.doi.org/10.1021/bi7020553
Deng L, Cho S, Malchiodi EL, Kerzic MC, Dam J, Mariuzza RA.
Molecular architecture of the major histocompatibility complex class I-binding site of Ly49 natural killer cell receptors.
J. Biol. Chem. 283 2008 16840-9 [PubMed: 18426793]
http://dx.doi.org/10.1074/jbc.M801526200
Petrie EJ, Clements CS, Lin J, Sullivan LC, Johnson D, Huyton T, Heroux A, Hoare HL, Beddoe T, Reid HH, Wilce MC, Brooks AG, Rossjohn J.
CD94-NKG2A recognition of human leukocyte antigen (HLA)-E bound to an HLA class I leader sequence.
J. Exp. Med. 205 2008 725-35 [PubMed: 18332182]
http://dx.doi.org/10.1084/jem.20072525
Kaiser BK, Pizarro JC, Kerns J, Strong RK.
Structural basis for NKG2A/CD94 recognition of HLA-E.
Proc. Natl. Acad. Sci. U.S.A. 105 2008 6696-701 [PubMed: 18448674]
http://dx.doi.org/10.1073/pnas.0802736105
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InterPro 24.0