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InterPro: IPR016118 Phosphatidic acid phosphatase/chloroperoxidase, N-terminal

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UniProtKB
Matches:
3218 proteins
AccessionHelp IPR016118 P_Acid_Pase/Cl_peroxidase_N
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Found in IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase
IPR001011 Acid phosphatase, class A, bacterial
IPR011158 Nonspecific acid phosphatase, class A
Contains IPR018296 Acid phosphatase, class A, bacterial, conserved site
GO Term annotationHelp
Function GO:0003824 catalytic activity
InterPro annotation
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AbstractHelp

This entry represents an alpha helical domain is found in type 2 phosphatidic acid phosphatases [1] and at the N-terminal of chloroperoxidases. The structure of chloroperoxidase from the fungus, Curvularia inaequalis, consists of a duplication, containing two core alpha-helical bundles arranged as in other family dimer [2]. Chloroperoxidases (EC:1.11.1.10) use a haem cofactor to bring about the chlorination of a range of organic molecules, forming stable C-Cl bonds. The enzyme active sites of the vanadium haloperoxidases have shown some conservation with a completely different set of enzymes, the phosphatidic acid phosphatases (EC:3.1.3.4). This sub-group of acid phosphatases are histidine phosphatase, using histidine for the nucleophilic attack in the first step of the reaction [3]. Amino acid residues involved in binding phosphate/vanadate are conserved between the two families, supporting a proposal that vanadium passes through a tetrahedral intermediate during the reaction mechanism.

Structural linksHelp
CATH: 1.20.144.10
Database linksHelp
Enzyme: EC:3.1.3

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR016118 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O14495 Lipid phosphate phosphohydrolase 3

O34349 Putative lipid phosphate phosphatase yodM

Q3UMZ3 Phosphatidate phosphatase PPAPDC1B

Q8LFD1 Putative lipid phosphate phosphatase 3, chloroplastic

Q9V576 Putative phosphatidate phosphatase

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase
IPR016118 Phosphatidic acid phosphatase/chloroperoxidase, N-terminal
SWISS-MODEL
ModBase

PublicationsHelp
1. Ishikawa K, Mihara Y, Gondoh K, Suzuki E, Asano Y.
X-ray structures of a novel acid phosphatase from Escherichia blattae and its complex with the transition-state analog molybdate.
EMBO J. 19 2412-23 2000 [PubMed: 10835340]
http://dx.doi.org/10.1093/emboj/19.11.2412
2. Macedo-Ribeiro S, Hemrika W, Renirie R, Wever R, Messerschmidt A.
X-ray crystal structures of active site mutants of the vanadium-containing chloroperoxidase from the fungus Curvularia inaequalis.
J. Biol. Inorg. Chem. 4 209-19 1999 [PubMed: 10499093]
http://dx.doi.org/10.1007/s007750050306
3. Littlechild J, Garcia-Rodriguez E, Dalby A, Isupov M.
Structural and functional comparisons between vanadium haloperoxidase and acid phosphatase enzymes.
J. Mol. Recognit. 15 291-6 2002 [PubMed: 12447906]
http://dx.doi.org/10.1002/jmr.590

Additional ReadingHelp
de Macedo-Ribeiro S, Renirie R, Wever R, Messerschmidt A.
Crystal structure of a trapped phosphate intermediate in vanadium apochloroperoxidase catalyzing a dephosphorylation reaction.
Biochemistry 47 2008 929-34 [PubMed: 18163651]
http://dx.doi.org/10.1021/bi7018628
Makde RD, Kumar V, Rao AS, Yadava VS, Mahajan SK.
Purification, crystallization and preliminary X-ray diffraction studies of recombinant class A non-specific acid phosphatase of Salmonella typhimurium.
Acta Crystallogr. D Biol. Crystallogr. 59 2003 515-8 [PubMed: 12595712]
http://dx.doi.org/10.1107/S0907444902022679
Makde RD, Mahajan SK, Kumar V.
Structure and mutational analysis of the PhoN protein of Salmonella typhimurium provide insight into mechanistic details.
Biochemistry 46 2007 2079-90 [PubMed: 17263560]
http://dx.doi.org/10.1021/bi062180g
Makde RD, Dikshit K, Kumar V.
Protein engineering of class-A non-specific acid phosphatase (PhoN) of Salmonella typhimurium: modulation of the pH-activity profile.
Biomol. Eng. 23 2006 247-51 [PubMed: 16901752]
http://dx.doi.org/10.1016/j.bioeng.2006.06.004
Ishikawa K, Mihara Y, Shimba N, Ohtsu N, Kawasaki H, Suzuki E, Asano Y.
Enhancement of nucleoside phosphorylation activity in an acid phosphatase.
Protein Eng. 15 2002 539-43 [PubMed: 12200535]
http://dx.doi.org/10.1093/protein/15.7.539
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InterPro 23.1