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InterPro: IPR016066 Alpha-D-phosphohexomutase, conserved site

Protein matchesHelp
UniProtKB
Matches:
4646 proteins
AccessionHelp IPR016066 A-D-PHexomutase_CS
TypeHelp Conserved_site
SignaturesHelp
InterPro RelationshipsHelp
Found in IPR005841 Alpha-D-phosphohexomutase, N-terminal
IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I
IPR006352 Phosphoglucosamine mutase
IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III
IPR016657 Phosphoacetylglucosamine mutase
GO Term annotationHelp
Function GO:0000287 magnesium ion binding
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) [1]. PGM (EC:5.4.2.2) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose [2]. PGM/PMM (EC:5.4.2.2; EC:5.4.2.8) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [3, 4]. Both PNGM (EC:5.4.2.3) and PAGM (EC:5.4.2.10) are involved in the biosynthesis of UDP-N-acetylglucosamine [5, 6].

Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme [7].

The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate.

This entry represents the conserved site at the N-terminal region of alpha-D-phosphohexomutase enzymes.

Structural linksHelp
SCOP: c.84.1.1
CATH: 3.40.120.10
Database linksHelp
PDBe-motif: PS00710
Enzyme: EC:5.4.2.10
PROSITE doc: PDOC00589

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR016066 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
A6NIQ7 Putative PGM5-like protein 2

O49299 Probable phosphoglucomutase, cytoplasmic 1

P33401 Phosphoglucomutase-1

Q9CYR6 Phosphoacetylglucosamine mutase

Q9VUY9 Phosphoglucomutase

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR005841 Alpha-D-phosphohexomutase, N-terminal
IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III
IPR005843 Alpha-D-phosphohexomutase, C-terminal
IPR016066 Alpha-D-phosphohexomutase, conserved site
IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II
IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I
IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III
IPR016657 Phosphoacetylglucosamine mutase
SWISS-MODEL
PDB Chain
ModBase
SCOP Domain

PublicationsHelp
1. Levin S, Almo SC, Satir BH.
Functional diversity of the phosphoglucomutase superfamily: structural implications.
Protein Eng. 12 737-46 1999 [PubMed: 10506283]
http://dx.doi.org/10.1093/protein/12.9.737
2. Liu Y, Ray WJ Jr, Baranidharan S.
Structure of rabbit muscle phosphoglucomutase refined at 2.4 A resolution.
Acta Crystallogr. D Biol. Crystallogr. 53 392-405 1997 [PubMed: 15299905]
http://dx.doi.org/10.1107/S0907444997000875
3. Regni C, Schramm AM, Beamer LJ.
The reaction of phosphohexomutase from Pseudomonas aeruginosa: structural insights into a simple processive enzyme.
J. Biol. Chem. 281 15564-71 2006 [PubMed: 16595672]
http://dx.doi.org/10.1074/jbc.M600590200
4. Regni C, Naught L, Tipton PA, Beamer LJ.
Structural basis of diverse substrate recognition by the enzyme PMM/PGM from P. aeruginosa.
Structure 12 55-63 2004 [PubMed: 14725765]
http://dx.doi.org/10.1016/j.str.2003.11.015
5. Tavares IM, Jolly L, Pompeo F, Leitao JH, Fialho AM, Sa-Correia I, Mengin-Lecreulx D.
Identification of the Pseudomonas aeruginosa glmM gene, encoding phosphoglucosamine mutase.
J. Bacteriol. 182 4453-7 2000 [PubMed: 10913078]
http://dx.doi.org/10.1128/JB.182.16.4453-4457.2000
6. Mio T, Yamada-Okabe T, Arisawa M, Yamada-Okabe H.
Functional cloning and mutational analysis of the human cDNA for phosphoacetylglucosamine mutase: identification of the amino acid residues essential for the catalysis.
Biochim. Biophys. Acta 1492 369-76 2000 [PubMed: 11004509]
http://dx.doi.org/10.1016/S0167-4781(00)00120-2
7. Shackelford GS, Regni CA, Beamer LJ.
Evolutionary trace analysis of the alpha-D-phosphohexomutase superfamily.
Protein Sci. 13 2130-8 2004 [PubMed: 15238632]
http://dx.doi.org/10.1110/ps.04801104

Additional ReadingHelp
Stevenson G, Lee SJ, Romana LK, Reeves PR.
The cps gene cluster of Salmonella strain LT2 includes a second mannose pathway: sequence of two genes and relationship to genes in the rfb gene cluster.
Mol. Gen. Genet. 227 1991 173-80 [PubMed: 1712067]
http://dx.doi.org/10.1007/BF00259668
Regni C, Shackelford GS, Beamer LJ.
Complexes of the enzyme phosphomannomutase/phosphoglucomutase with a slow substrate and an inhibitor.
Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 62 2006 722-6 [PubMed: 16880541]
http://ukpmc.ac.uk/picrender.cgi?tool=EBI&pubmedid=16880541&action=stream&blobtype=pdf
Schramm AM, Mehra-Chaudhary R, Furdui CM, Beamer LJ.
Backbone flexibility, conformational change, and catalysis in a phosphohexomutase from Pseudomonas aeruginosa.
Biochemistry 47 2008 9154-62 [PubMed: 18690721]
http://dx.doi.org/10.1021/bi8005219
Dai JB, Liu Y, Ray WJ Jr, Konno M.
The crystal structure of muscle phosphoglucomutase refined at 2.7-angstrom resolution.
J. Biol. Chem. 267 1992 6322-37 [PubMed: 1532581]
http://intl.jbc.org/cgi/reprint/267/9/6322.pdf
Regni C, Tipton PA, Beamer LJ.
Crystal structure of PMM/PGM: an enzyme in the biosynthetic pathway of P. aeruginosa virulence factors.
Structure 10 2002 269-79 [PubMed: 11839312]
http://dx.doi.org/10.1016/S0969-2126(02)00705-0
Zielinski NA, Chakrabarty AM, Berry A.
Characterization and regulation of the Pseudomonas aeruginosa algC gene encoding phosphomannomutase.
J. Biol. Chem. 266 1991 9754-63 [PubMed: 1903398]
http://intl.jbc.org/cgi/content/abstract/266/15/9754
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InterPro 23.1