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InterPro: IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal

Protein matchesHelp
UniProtKB
Matches:
5979 proteins
AccessionHelp IPR015955 Lactate_DH/Glyco_Ohase_4_C
SecondaryHelp IPR001236
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Found in IPR001088 Glycoside hydrolase, family 4
IPR001236 Lactate/malate dehydrogenase
IPR001557 L-lactate/malate dehydrogenase
IPR010097 Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria
IPR010945 Malate dehydrogenase, NAD/NADP
IPR011272 Lactate dehydrogenase
IPR011273 Malate dehydrogenase, NADP-dependent, plants
IPR011274 Malate dehydrogenase, NAD-dependent, cytosolic
IPR011275 Malate dehydrogenase, NAD-dependent
IPR011304 L-lactate dehydrogenase
Contains IPR001252 Malate dehydrogenase, active site
IPR018177 L-lactate dehydrogenase, active site
GO Term annotationHelp
Process GO:0005975 carbohydrate metabolic process
Function GO:0003824 catalytic activity
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

This entry represents a structural motif found at the C-terminal of lactate dehydrogenase (EC:1.1.1.27)and malate dehydrogenases (EC:1.1.1.37), as well as at the C-terminal of family 4 glycoside hydrolases (EC:3.2.1). These domains have an unusual fold consisting of segregated alpha-helical and beta-sheet regions, although they contain predominantly anti-parallel beta-sheets [1, 2, 3].

L-lactate dehydrogenases are metabolic enzymes that catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle.

O-Glycosyl hydrolases EC:3.2.1. are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [4, 5, 6]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site [7]. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Glycoside hydrolase family 4 GH4 comprises enzymes with several known activities; 6-phospho-beta-glucosidase (EC:3.2.1.86); 6-phospho-alpha-glucosidase (EC:3.2.1.122); alpha-galactosidase (EC:3.2.1.22).

Structural linksHelp
PDB - click here
CATH: 3.90.110.10
Database linksHelp
Enzyme: EC:1.1.1

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR015955 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O02640 Probable malate dehydrogenase, mitochondrial

P00338 L-lactate dehydrogenase A chain

P00342 L-lactate dehydrogenase C chain

P17505 Malate dehydrogenase, mitochondrial

Q95028 L-lactate dehydrogenase

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR001236 Lactate/malate dehydrogenase
IPR001252 Malate dehydrogenase, active site
IPR011304 L-lactate dehydrogenase
IPR001557 L-lactate/malate dehydrogenase
IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
IPR016040 NAD(P)-binding domain
IPR010097 Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria
IPR018177 L-lactate dehydrogenase, active site
PDB Chain
ModBase
CATH Domain
SWISS-MODEL
SCOP Domain

PublicationsHelp
1. Read JA, Winter VJ, Eszes CM, Sessions RB, Brady RL.
Structural basis for altered activity of M- and H-isozyme forms of human lactate dehydrogenase.
Proteins 43 175-85 2001 [PubMed: 11276087]
http://dx.doi.org/10.1002/1097-0134(20010501)43:2<175::AID-PROT1029>3.0.CO;2-#
2. Gleason WB, Fu Z, Birktoft J, Banaszak L.
Refined crystal structure of mitochondrial malate dehydrogenase from porcine heart and the consensus structure for dicarboxylic acid oxidoreductases.
Biochemistry 33 2078-88 1994 [PubMed: 8117664]
http://dx.doi.org/10.1021/bi00174a014
3. Lodge JA, Maier T, Liebl W, Hoffmann V, Strater N.
Crystal structure of Thermotoga maritima alpha-glucosidase AglA defines a new clan of NAD+-dependent glycosidases.
J. Biol. Chem. 278 19151-8 2003 [PubMed: 12588867]
http://dx.doi.org/10.1074/jbc.M211626200
4. Henrissat B, Callebaut I, Fabrega S, Lehn P, Mornon JP, Davies G.
Conserved catalytic machinery and the prediction of a common fold for several families of glycosyl hydrolases.
Proc. Natl. Acad. Sci. U.S.A. 92 7090-4 1995 [PubMed: 7624375]
http://www.pubmedcentral.nih.gov/picrender.fcgi?tool=EBI&pubmedid=7624375&action=stream&blobtype=pdf
5. Davies G, Henrissat B.
Structures and mechanisms of glycosyl hydrolases.
Structure 3 853-9 1995 [PubMed: 8535779]
http://dx.doi.org/10.1016/S0969-2126(01)00220-9
6. Bairoch A.
Classification of glycosyl hydrolase families and index of glycosyl hydrolase entries in SWISS-PROT.
1999
7. Henrissat B, Coutinho PM.
Carbohydrate-Active Enzymes server.
1999

Additional ReadingHelp
Kawakami R, Sakuraba H, Goda S, Tsuge H, Ohshima T.
Refolding, characterization and crystal structure of (S)-malate dehydrogenase from the hyperthermophilic archaeon Aeropyrum pernix.
Biochim. Biophys. Acta 1794 2009 1496-504 [PubMed: 19555779]
Fioravanti E, Vellieux FM, Amara P, Madern D, Weik M.
Specific radiation damage to acidic residues and its relation to their chemical and structural environment.
14 2007 84-91 [PubMed: 17211074]
http://dx.doi.org/10.1107/S0909049506038623
Coquelle N, Fioravanti E, Weik M, Vellieux F, Madern D.
Activity, stability and structural studies of lactate dehydrogenases adapted to extreme thermal environments.
J. Mol. Biol. 374 2007 547-62 [PubMed: 17936781]
http://dx.doi.org/10.1016/j.jmb.2007.09.049
Vedadi M, Lew J, Artz J, Amani M, Zhao Y, Dong A, Wasney GA, Gao M, Hills T, Brokx S, Qiu W, Sharma S, Diassiti A, Alam Z, Melone M, Mulichak A, Wernimont A, Bray J, Loppnau P, Plotnikova O, Newberry K, Sundararajan E, Houston S, Walker J, Tempel W, Bochkarev A, Kozieradzki I, Edwards A, Arrowsmith C, Roos D, Kain K, Hui R.
Genome-scale protein expression and structural biology of Plasmodium falciparum and related Apicomplexan organisms.
Mol. Biochem. Parasitol. 151 2007 100-10 [PubMed: 17125854]
http://dx.doi.org/10.1016/j.molbiopara.2006.10.011
Cox B, Chit MM, Weaver T, Gietl C, Bailey J, Bell E, Banaszak L.
Organelle and translocatable forms of glyoxysomal malate dehydrogenase. The effect of the N-terminal presequence.
FEBS J. 272 2005 643-54 [PubMed: 15670147]
http://dx.doi.org/10.1111/j.1742-4658.2004.04475.x
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InterPro 23.1