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InterPro: IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
Protein matches
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UniProtKB Matches: 5979 proteins |
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Accession
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IPR015955 Lactate_DH/Glyco_Ohase_4_C |
Secondary
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IPR001236
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Type
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Domain |
Signatures
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InterPro Relationships
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Found in
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IPR001088 Glycoside hydrolase, family 4
IPR001236 Lactate/malate dehydrogenase
IPR001557 L-lactate/malate dehydrogenase
IPR010097 Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria
IPR010945 Malate dehydrogenase, NAD/NADP
IPR011272 Lactate dehydrogenase
IPR011273 Malate dehydrogenase, NADP-dependent, plants
IPR011274 Malate dehydrogenase, NAD-dependent, cytosolic
IPR011275 Malate dehydrogenase, NAD-dependent
IPR011304 L-lactate dehydrogenase
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Contains
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IPR001252 Malate dehydrogenase, active site
IPR018177 L-lactate dehydrogenase, active site
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GO Term annotation
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Process
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GO:0005975 carbohydrate metabolic process
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Function
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GO:0003824 catalytic activity
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InterPro annotation
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Entry Details in BioMart
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Abstract
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This entry represents a structural motif found at the C-terminal of lactate dehydrogenase (EC:1.1.1.27)and malate dehydrogenases (EC:1.1.1.37), as well as at the C-terminal of family 4 glycoside hydrolases (EC:3.2.1). These domains have an unusual fold consisting of segregated alpha-helical and beta-sheet regions, although they contain predominantly anti-parallel beta-sheets [1, 2, 3].
L-lactate dehydrogenases are metabolic enzymes that catalyse the conversion of
L-lactate to pyruvate, the last step in anaerobic glycolysis. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle.
O-Glycosyl hydrolases EC:3.2.1. are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [4, 5, 6]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site [7]. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Glycoside hydrolase family 4 GH4
comprises enzymes with several known activities; 6-phospho-beta-glucosidase (EC:3.2.1.86); 6-phospho-alpha-glucosidase (EC:3.2.1.122); alpha-galactosidase (EC:3.2.1.22).
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Structural links
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Database links
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Publications
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1.
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Read JA, Winter VJ, Eszes CM, Sessions RB, Brady RL.
Structural basis for altered activity of M- and H-isozyme forms of human lactate dehydrogenase.
Proteins 43 175-85 2001
[PubMed: 11276087]
http://dx.doi.org/10.1002/1097-0134(20010501)43:2<175::AID-PROT1029>3.0.CO;2-#
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2.
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Gleason WB, Fu Z, Birktoft J, Banaszak L.
Refined crystal structure of mitochondrial malate dehydrogenase from porcine heart and the consensus structure for dicarboxylic acid oxidoreductases.
Biochemistry 33 2078-88 1994
[PubMed: 8117664]
http://dx.doi.org/10.1021/bi00174a014
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3.
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Lodge JA, Maier T, Liebl W, Hoffmann V, Strater N.
Crystal structure of Thermotoga maritima alpha-glucosidase AglA defines a new clan of NAD+-dependent glycosidases.
J. Biol. Chem. 278 19151-8 2003
[PubMed: 12588867]
http://dx.doi.org/10.1074/jbc.M211626200
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4.
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Henrissat B, Callebaut I, Fabrega S, Lehn P, Mornon JP, Davies G.
Conserved catalytic machinery and the prediction of a common fold for several families of glycosyl hydrolases.
Proc. Natl. Acad. Sci. U.S.A. 92 7090-4 1995
[PubMed: 7624375]
http://www.pubmedcentral.nih.gov/picrender.fcgi?tool=EBI&pubmedid=7624375&action=stream&blobtype=pdf
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5.
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Davies G, Henrissat B.
Structures and mechanisms of glycosyl hydrolases.
Structure 3 853-9 1995
[PubMed: 8535779]
http://dx.doi.org/10.1016/S0969-2126(01)00220-9
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6.
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Bairoch A.
Classification of glycosyl hydrolase families and index of glycosyl hydrolase entries in SWISS-PROT.
1999
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7.
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Henrissat B, Coutinho PM.
Carbohydrate-Active Enzymes server.
1999
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Additional Reading
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Kawakami R, Sakuraba H, Goda S, Tsuge H, Ohshima T.
Refolding, characterization and crystal structure of (S)-malate dehydrogenase from the hyperthermophilic archaeon Aeropyrum pernix.
Biochim. Biophys. Acta 1794 2009 1496-504
[PubMed: 19555779]
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Fioravanti E, Vellieux FM, Amara P, Madern D, Weik M.
Specific radiation damage to acidic residues and its relation to their chemical and structural environment.
14 2007 84-91
[PubMed: 17211074]
http://dx.doi.org/10.1107/S0909049506038623
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Coquelle N, Fioravanti E, Weik M, Vellieux F, Madern D.
Activity, stability and structural studies of lactate dehydrogenases adapted to extreme thermal environments.
J. Mol. Biol. 374 2007 547-62
[PubMed: 17936781]
http://dx.doi.org/10.1016/j.jmb.2007.09.049
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Vedadi M, Lew J, Artz J, Amani M, Zhao Y, Dong A, Wasney GA, Gao M, Hills T, Brokx S, Qiu W, Sharma S, Diassiti A, Alam Z, Melone M, Mulichak A, Wernimont A, Bray J, Loppnau P, Plotnikova O, Newberry K, Sundararajan E, Houston S, Walker J, Tempel W, Bochkarev A, Kozieradzki I, Edwards A, Arrowsmith C, Roos D, Kain K, Hui R.
Genome-scale protein expression and structural biology of Plasmodium falciparum and related Apicomplexan organisms.
Mol. Biochem. Parasitol. 151 2007 100-10
[PubMed: 17125854]
http://dx.doi.org/10.1016/j.molbiopara.2006.10.011
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Cox B, Chit MM, Weaver T, Gietl C, Bailey J, Bell E, Banaszak L.
Organelle and translocatable forms of glyoxysomal malate dehydrogenase. The effect of the N-terminal presequence.
FEBS J. 272 2005 643-54
[PubMed: 15670147]
http://dx.doi.org/10.1111/j.1742-4658.2004.04475.x
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