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InterPro: IPR015922 Carbohydrate-binding domain, family 9-like, subgroup

Protein matchesHelp
UniProtKB
Matches:
254 proteins
AccessionHelp IPR015922 Carb-bd_dom_fam9-like_subgr
SecondaryHelp IPR010502
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR008960 Carbohydrate-binding domain family 9-like
Children IPR010502 Carbohydrate-binding domain, family 9
IPR019248 Protein of unknown function DUF2223
GO Term annotationHelp
Process GO:0016052 carbohydrate catabolic process
Function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0030246 carbohydrate binding
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

This entry represents a family 9 carbohydrate-binding module (CBD9)-like domain found in both CBD9 proteins such as endo-1,4-beta-xylanase (EC:3.2.1.8), as well as a C-terminal domain in the glucodextranase family of proteins (EC:3.2.1.70). The CBD9-like domain assumes an immunoglobulin-like beta-sandwich fold, with an additional beta-strand at the N terminus [1].

Bacterial extracellular cellulases and hemicellulases are involved in the hydrolysis of the major structural polysaccharides of plant cell walls. These are usually modular enzymes that contain catalytic and non-catalytic domains. The CBD9 domain binds to cellulose, xylan, as well as to a range of soluble di- and mono-saccharides, and is found in cellulose- and xylan-degrading enzymes [2].

Glucodextranase hydrolyzes alpha-1,6-glucosidic linkages of dextran from the non-reducing end to produce beta-D-glucose via an inverting reaction mechanism and classified into the glycoside hydrolase family 15 (GH15) [3].

Structural linksHelp
CATH: 2.60.40.1190
Database linksHelp
Enzyme: EC:3.2.1.8

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR015922 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
Q60037 Endo-1,4-beta-xylanase A

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR003305 Carbohydrate-binding, CenC-like
IPR013781 Glycoside hydrolase, subgroup, catalytic core
IPR015922 Carbohydrate-binding domain, family 9-like, subgroup
IPR010502 Carbohydrate-binding domain, family 9
IPR001000 Glycoside hydrolase, family 10
IPR008979 Galactose-binding domain-like
IPR017853 Glycoside hydrolase, catalytic core
IPR008960 Carbohydrate-binding domain family 9-like
PDB Chain
ModBase
CATH Domain
SWISS-MODEL
SCOP Domain

PublicationsHelp
1. Rotsaert FA, Hallberg BM, de Vries S, Moenne-Loccoz P, Divne C, Renganathan V, Gold MH.
Biophysical and structural analysis of a novel heme B iron ligation in the flavocytochrome cellobiose dehydrogenase.
J. Biol. Chem. 278 33224-31 2003 [PubMed: 12796496]
http://dx.doi.org/10.1074/jbc.M302653200
2. Hazlewood GP, Gilbert HJ.
Structure and function analysis of Pseudomonas plant cell wall hydrolases.
Prog. Nucleic Acid Res. Mol. Biol. 61 211-41 1998 [PubMed: 9752722]
3. Mizuno M, Tonozuka T, Suzuki S, Uotsu-Tomita R, Kamitori S, Nishikawa A, Sakano Y.
Structural insights into substrate specificity and function of glucodextranase.
J. Biol. Chem. 279 10575-83 2004 [PubMed: 14660574]
http://dx.doi.org/10.1074/jbc.M310771200

Additional ReadingHelp
Notenboom V, Boraston AB, Kilburn DG, Rose DR.
Crystal structures of the family 9 carbohydrate-binding module from Thermotoga maritima xylanase 10A in native and ligand-bound forms.
Biochemistry 40 2001 6248-56 [PubMed: 11371186]
http://dx.doi.org/10.1021/bi0101704
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InterPro 23.1