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InterPro: IPR015919 Cadherin-like

Protein matchesHelp
UniProtKB
Matches:
3193 proteins
AccessionHelp IPR015919 Cadherin-like
SecondaryHelp IPR002126 , IPR008959
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Children IPR002126 Cadherin
IPR006644 Dystroglycan-type cadherin-like
Found in IPR015777 Tyrosine-protein kinase, Ret receptor-like
Contains IPR013164 Cadherin, N-terminal
IPR014868 Cadherin prodomain like
IPR019599 Alpha-galactosidase, NEW1 domain
IPR020894 Cadherin conserved site
GO Term annotationHelp
Function GO:0005509 calcium ion binding
Component GO:0016020 membrane
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

This entry represents domains with an immunoglobulin-like beta-sandwich fold, consisting of 7 strands in two sheets with a Greek key topology. Such domains are found in cadherin, as well as at the N-terminal of dystroglycan. Dystroglycan is a cell surface receptor consisting of two subunits: alpha-dystroglycan, extracellular and highly glycosylated, and beta-dystroglycan, spanning the cell membrane. It is a pivotal member of the dystrophin-glycoprotein complex and is involved in a wide variety of important cellular processes such as the stabilisation of the muscle fiber sarcolemma or the clustering of acetylcholine receptors [1, 2, 3].

Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [4, 5,6]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins.

Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain [7]. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.

Structural linksHelp
SCOP: b.1.6.1 , b.1.6.2

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR015919 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O15943 Neural-cadherin

O60245 Protocadherin-7

O88689 Protocadherin alpha-4

P34616 Cadherin-3

P38928 Protein AXL2

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR013164 Cadherin, N-terminal
IPR001791 Laminin G
IPR001881 EGF-like calcium-binding
IPR013320 Concanavalin A-like lectin/glucanase, subgroup
IPR020894 Cadherin conserved site
IPR013585 Protocadherin
IPR006210 EGF-like
IPR015919 Cadherin-like
IPR006644 Dystroglycan-type cadherin-like
IPR002126 Cadherin
IPR000742 EGF-like, type 3
IPR013032 EGF-like region, conserved site
IPR000233 Cadherin, cytoplasmic domain
IPR008985 Concanavalin A-like lectin/glucanase
IPR012680 Laminin G, subdomain 2
PDB Chain
ModBase
SWISS-MODEL

PublicationsHelp
1. Dickens NJ, Beatson S, Ponting CP.
Cadherin-like domains in alpha-dystroglycan, alpha/epsilon-sarcoglycan and yeast and bacterial proteins.
Curr. Biol. 12 R197-9 2002 [PubMed: 11909544]
http://dx.doi.org/10.1016/S0960-9822(02)00748-0
2. Bozic D, Sciandra F, Lamba D, Brancaccio A.
The structure of the N-terminal region of murine skeletal muscle alpha-dystroglycan discloses a modular architecture.
J. Biol. Chem. 279 44812-6 2004 [PubMed: 15326183]
http://dx.doi.org/10.1074/jbc.C400353200
3. Barresi R, Campbell KP.
Dystroglycan: from biosynthesis to pathogenesis of human disease.
J. Cell. Sci. 119 199-207 2006 [PubMed: 16410545]
http://dx.doi.org/10.1242/jcs.02814
4. Takeichi M.
Cadherins: a molecular family important in selective cell-cell adhesion.
Annu. Rev. Biochem. 59 237-52 1990 [PubMed: 2197976]
http://dx.doi.org/10.1146/annurev.bi.59.070190.001321
5. Takeichi M.
Cadherins: A molecular family essential for selective cell-cell adhesion and animal morphogenesis.
Trends Genet. 3 213-7 1987
6. Wheelock MJ, Johnson KR.
Cadherins as modulators of cellular phenotype.
Annu. Rev. Cell Dev. Biol. 19 207-35 2003 [PubMed: 14570569]
http://dx.doi.org/10.1146/annurev.cellbio.19.011102.111135
7. Ivanov DB, Philippova MP, Tkachuk VA.
Structure and functions of classical cadherins.
Biochemistry Mosc. 66 1174-86 2001 [PubMed: 11736639]
http://dx.doi.org/10.1023/A:1012445316415

Additional ReadingHelp
Koch AW, Farooq A, Shan W, Zeng L, Colman DR, Zhou MM.
Structure of the neural (N-) cadherin prodomain reveals a cadherin extracellular domain-like fold without adhesive characteristics.
Structure 12 2004 793-805 [PubMed: 15130472]
http://dx.doi.org/10.1016/j.str.2004.02.034
Parisini E, Higgins JM, Liu JH, Brenner MB, Wang JH.
The crystal structure of human E-cadherin domains 1 and 2, and comparison with other cadherins in the context of adhesion mechanism.
J. Mol. Biol. 373 2007 401-11 [PubMed: 17850815]
http://dx.doi.org/10.1016/j.jmb.2007.08.011
Wollert T, Pasche B, Rochon M, Deppenmeier S, van den Heuvel J, Gruber AD, Heinz DW, Lengeling A, Schubert WD.
Extending the host range of Listeria monocytogenes by rational protein design.
Cell 129 2007 891-902 [PubMed: 17540170]
http://dx.doi.org/10.1016/j.cell.2007.03.049
Wollert T, Heinz DW, Schubert WD.
Thermodynamically reengineering the listerial invasion complex InlA/E-cadherin.
Proc. Natl. Acad. Sci. U.S.A. 104 2007 13960-5 [PubMed: 17715295]
http://dx.doi.org/10.1073/pnas.0702199104
Patel SD, Ciatto C, Chen CP, Bahna F, Rajebhosale M, Arkus N, Schieren I, Jessell TM, Honig B, Price SR, Shapiro L.
Type II cadherin ectodomain structures: implications for classical cadherin specificity.
Cell 124 2006 1255-68 [PubMed: 16564015]
http://dx.doi.org/10.1016/j.cell.2005.12.046
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InterPro 24.0