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InterPro: IPR015889 Intradiol ring-cleavage dioxygenase, core
Protein matches
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UniProtKB Matches: 1673 proteins |
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Accession
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IPR015889 Intradiol_dOase_core |
Secondary
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IPR000627
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Type
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Domain |
Signatures
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InterPro Relationships
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Found in
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IPR012785 Protocatechuate 3,4-dioxygenase, beta subunit
IPR012786 Protocatechuate 3,4-dioxygenase, alpha subunit
IPR012800 Catechol 1,2-dioxygenase, actinobacteria
IPR012801 Catechol 1,2-dioxygenase, proteobacteria
IPR012817 Chlorocatechol 1,2-dioxygenase
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Contains
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IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal
IPR007535 Catechol dioxygenase, N-terminal
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GO Term annotation
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Process
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GO:0055114 oxidation reduction
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Function
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GO:0005506 iron ion binding
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
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InterPro annotation
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Entry Details in BioMart
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Abstract
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Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [1]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues.
Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (EC:1.13.11.1); protocatechuate 3,4-dioxygenase (3,4-PCD) (EC:1.13.11.3); and chlorocatechol 1,2-dioxygenase (EC:1.13.11.1) [2].
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Structural links
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Database links
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Additional Reading
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Vetting MW, D'Argenio DA, Ornston LN, Ohlendorf DH.
Structure of Acinetobacter strain ADP1 protocatechuate 3, 4-dioxygenase at 2.2 A resolution: implications for the mechanism of an intradiol dioxygenase.
Biochemistry 39 2000 7943-55
[PubMed: 10891075]
http://dx.doi.org/10.1021/bi000151e
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Vetting MW, Ohlendorf DH.
The 1.8 A crystal structure of catechol 1,2-dioxygenase reveals a novel hydrophobic helical zipper as a subunit linker.
Structure 8 2000 429-40
[PubMed: 10801478]
http://dx.doi.org/10.1016/S0969-2126(00)00122-2
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Brown CK, Vetting MW, Earhart CA, Ohlendorf DH.
Biophysical analyses of designed and selected mutants of protocatechuate 3,4-dioxygenase1.
Annu. Rev. Microbiol. 58 2004 555-85
[PubMed: 15487948]
http://dx.doi.org/10.1146/annurev.micro.57.030502.090927
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Valley MP, Brown CK, Burk DL, Vetting MW, Ohlendorf DH, Lipscomb JD.
Roles of the equatorial tyrosyl iron ligand of protocatechuate 3,4-dioxygenase in catalysis.
Biochemistry 44 2005 11024-39
[PubMed: 16101286]
http://dx.doi.org/10.1021/bi050902i
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InterPro 23.1
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