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InterPro: IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site
Protein matches
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UniProtKB Matches: 1287 proteins |
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Accession
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IPR015881 Ring-hydroxy_dOase_2Fe2S_BS |
Secondary
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IPR001663
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Type
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Binding_site |
Signatures
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InterPro Relationships
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Found in
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IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit
IPR017638 Anthranilate 1,2-dioxygenase, large subunit
IPR017639 Benzoate 1,2-dioxygenase, large subunit
IPR017941 Rieske [2Fe-2S] iron-sulphur domain
IPR020875 3-phenylpropionate/cinnamic acid dioxygenase, alpha subunit
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GO Term annotation
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Process
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GO:0055114 oxidation reduction
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Function
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GO:0005506 iron ion binding
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0051537 2 iron, 2 sulfur cluster binding
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InterPro annotation
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Entry Details in BioMart
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Abstract
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Aromatic ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols [1]. The complex has both hydroxylase and electron transfer components. The hydroxylase component is itself composed of two subunits: an alpha-subunit of about 50 kDa, and a beta-subunit of about 20 kDa. The electron transfer component is either composed of two subunits: a ferredoxin and a ferredoxin reductase or by a single bifunctional ferredoxin/reductase subunit. Sequence analysis of hydroxylase subunits of ring hydroxylating systems (including toluene, benzene and napthalene 1,2-dioxygenases) suggests they are derived from a common ancestor [1]. The alpha-subunit binds both a Rieske-like 2Fe-2S cluster and an iron atom: conserved Cys and His residues in the N-terminal region may provide 2Fe-2S ligands, while conserved His and Tyr residues may coordinate the iron. The beta subunit may be responsible for the substrate specificity of the dioxygenase system [1].
The alpha-subunit of the hydroxylase components bind both a 2Fe-2S type iron-sulphur centre and an iron atom. There is, in the N-terminal section of these proteins, a conserved region of 24 residues which contains two cysteines and two histidines which have been shown to be involved in the binding of the iron-sulphur centre [2].
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Structural links
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Database links
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Publications
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1.
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Neidle EL, Hartnett C, Ornston LN, Bairoch A, Rekik M, Harayama S.
Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases.
J. Bacteriol. 173 5385-95 1991
[PubMed: 1885518]
http://ukpmc.ac.uk/articlerender.cgi?tool=EBI&pubmedid=1885518
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2.
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Kauppi B, Lee K, Carredano E, Parales RE, Gibson DT, Eklund H, Ramaswamy S.
Structure of an aromatic-ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenase.
Structure 6 571-86 1998
[PubMed: 9634695]
http://dx.doi.org/10.1016/S0969-2126(98)00059-8
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Additional Reading
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Karlsson A, Parales JV, Parales RE, Gibson DT, Eklund H, Ramaswamy S.
NO binding to naphthalene dioxygenase.
J. Biol. Inorg. Chem. 10 2005 483-9
[PubMed: 15942729]
http://dx.doi.org/10.1007/s00775-005-0657-1
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Dong X, Fushinobu S, Fukuda E, Terada T, Nakamura S, Shimizu K, Nojiri H, Omori T, Shoun H, Wakagi T.
Crystal structure of the terminal oxygenase component of cumene dioxygenase from Pseudomonas fluorescens IP01.
J. Bacteriol. 187 2005 2483-90
[PubMed: 15774891]
http://dx.doi.org/10.1128/JB.187.7.2483-2490.2005
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Gakhar L, Malik ZA, Allen CC, Lipscomb DA, Larkin MJ, Ramaswamy S.
Structure and increased thermostability of Rhodococcus sp. naphthalene 1,2-dioxygenase.
J. Bacteriol. 187 2005 7222-31
[PubMed: 16237006]
http://dx.doi.org/10.1128/JB.187.21.7222-7231.2005
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Friemann R, Ivkovic-Jensen MM, Lessner DJ, Yu CL, Gibson DT, Parales RE, Eklund H, Ramaswamy S.
Structural insight into the dioxygenation of nitroarene compounds: the crystal structure of nitrobenzene dioxygenase.
J. Mol. Biol. 348 2005 1139-51
[PubMed: 15854650]
http://dx.doi.org/10.1016/j.jmb.2005.03.052
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Ferraro DJ, Okerlund AL, Mowers JC, Ramaswamy S.
Structural basis for regioselectivity and stereoselectivity of product formation by naphthalene 1,2-dioxygenase.
J. Bacteriol. 188 2006 6986-94
[PubMed: 16980501]
http://dx.doi.org/10.1128/JB.00707-06
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InterPro 23.1
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