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InterPro: IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal

Protein matchesHelp
UniProtKB
Matches:
2953 proteins
AccessionHelp IPR015867 N-reg_PII/ATP_PRibTrfase_C
SecondaryHelp IPR002187
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR011322 Nitrogen regulatory PII-like, alpha/beta
Children IPR003793 Protein of unknown function DUF190
IPR013115 Histidine biosynthesis HisG, C-terminal
Found in IPR002187 Nitrogen regulatory protein PII
IPR020621 Histidine biosynthesis HisG, ATP phosphoribosyltransferase, subgroup
Contains IPR002332 Nitrogen regulatory protein P-II, urydylation site
IPR017918 Nitrogen regulatory protein PII, conserved site
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

This entry represents a structural domain found in the nitrogen regulatory protein PII, in ATP phosphribosyltransferases (C-terminal domain), and in some bacterial hypothetical proteins. This domain consists of a ferredoxin-like alpha/beta sandwich, which forms trimeric structures with orthogonally packed beta-sheets around a three-fold axis.

PII is a tetrameric protein encoded by glnB that functions as a component of the adenylation cascade involved in the regulation of glutamine synthetase activity [1]. PII helps regulate the level of glutamine synthetase in response to nitrogen source availability. In nitrogen-limiting conditions, PII is uridylylated to form PII-UMP, which allows the deadenylation of glutamine synthetase, thus activating the enzyme. Conversely, in nitrogen excess, PI-UMP is deuridylated to PII, promoting the adenylation and deactivation of glutamine synthetase [2].

ATP phosphoribosyltransferase is the first enzyme of the histidine pathway. It is allosterically regulated, controlling the flow of intermediates through the pathway. The C-terminal domain is the regulatory region of the protein, which binds the allosteric inhibitor histidine [3].

Structural linksHelp
CATH: 3.30.70.120

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR015867 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O27550 ATP phosphoribosyltransferase

O66513 Nitrogen regulatory protein P-II

P00498 ATP phosphoribosyltransferase

P51254 Nitrogen regulatory protein P-II

Q55247 Nitrogen regulatory protein P-II

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR018198 ATP phosphoribosyltransferase, conserved site
IPR002332 Nitrogen regulatory protein P-II, urydylation site
IPR011322 Nitrogen regulatory PII-like, alpha/beta
IPR002187 Nitrogen regulatory protein PII
IPR013115 Histidine biosynthesis HisG, C-terminal
IPR017918 Nitrogen regulatory protein PII, conserved site
IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal
IPR013820 ATP phosphoribosyltransferase, catalytic domain
IPR001348 Histidine biosynthesis HisG: ATP phosphoribosyltransferase
IPR020621 Histidine biosynthesis HisG, ATP phosphoribosyltransferase, subgroup
PDB Chain
ModBase
CATH Domain
SWISS-MODEL
SCOP Domain

PublicationsHelp
1. de Zamaroczy M, Delorme F, Elmerich C.
Characterization of three different nitrogen-regulated promoter regions for the expression of glnB and glnA in Azospirillum brasilense.
Mol. Gen. Genet. 224 421-30 1990 [PubMed: 1702507]
http://dx.doi.org/10.1007/BF00262437
2. Connelly HM, Pelletier DA, Lu TY, Lankford PK, Hettich RL.
Characterization of pII family (GlnK1, GlnK2, and GlnB) protein uridylylation in response to nitrogen availability for Rhodopseudomonas palustris.
Anal. Biochem. 357 93-104 2006 [PubMed: 16860774]
http://dx.doi.org/10.1016/j.ab.2006.05.038
3. Lohkamp B, McDermott G, Campbell SA, Coggins JR, Lapthorn AJ.
The structure of Escherichia coli ATP-phosphoribosyltransferase: identification of substrate binding sites and mode of AMP inhibition.
J. Mol. Biol. 336 131-44 2004 [PubMed: 14741209]
http://dx.doi.org/10.1016/j.jmb.2003.12.020

Additional ReadingHelp
Conroy MJ, Durand A, Lupo D, Li XD, Bullough PA, Winkler FK, Merrick M.
The crystal structure of the Escherichia coli AmtB-GlnK complex reveals how GlnK regulates the ammonia channel.
Proc. Natl. Acad. Sci. U.S.A. 104 2007 1213-8 [PubMed: 17220269]
http://dx.doi.org/10.1073/pnas.0610348104
Llacer JL, Contreras A, Forchhammer K, Marco-Marin C, Gil-Ortiz F, Maldonado R, Fita I, Rubio V.
The crystal structure of the complex of PII and acetylglutamate kinase reveals how PII controls the storage of nitrogen as arginine.
Proc. Natl. Acad. Sci. U.S.A. 104 2007 17644-9 [PubMed: 17959776]
http://dx.doi.org/10.1073/pnas.0705987104
Yildiz O, Kalthoff C, Raunser S, Kuhlbrandt W.
Structure of GlnK1 with bound effectors indicates regulatory mechanism for ammonia uptake.
EMBO J. 26 2007 589-99 [PubMed: 17203075]
http://dx.doi.org/10.1038/sj.emboj.7601492
Mizuno Y, Moorhead GB, Ng KK.
Structural basis for the regulation of N-acetylglutamate kinase by PII in Arabidopsis thaliana.
J. Biol. Chem. 282 2007 35733-40 [PubMed: 17913711]
http://dx.doi.org/10.1074/jbc.M707127200
Gruswitz F, O'Connell J 3rd, Stroud RM.
Inhibitory complex of the transmembrane ammonia channel, AmtB, and the cytosolic regulatory protein, GlnK, at 1.96 A.
Proc. Natl. Acad. Sci. U.S.A. 104 2007 42-7 [PubMed: 17190799]
http://dx.doi.org/10.1073/pnas.0609796104
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InterPro 23.1