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InterPro: IPR015413 Aminoacyl-tRNA synthetase, class I (M)
Protein matches
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UniProtKB Matches: 3122 proteins |
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Accession
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IPR015413 aa-tRNA-synt_I |
Type
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Domain |
Signatures
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InterPro Relationships
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Children
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IPR014758 Methionyl-tRNA synthetase, class Ia, N-terminal
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Found in
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IPR002302 Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial
IPR002304 Methionyl-tRNA synthetase, class Ia
IPR004493 Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic
IPR014729 Rossmann-like alpha/beta/alpha sandwich fold
IPR020791 Leucyl-tRNA synthetase, class Ia, archaeal
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Contains
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IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site
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GO Term annotation
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Process
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GO:0006412 translation
GO:0006418 tRNA aminoacylation for protein translation
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Function
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GO:0000166 nucleotide binding
GO:0004812 aminoacyl-tRNA ligase activity
GO:0005524 ATP binding
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Component
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GO:0005737 cytoplasm
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InterPro annotation
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Entry Details in BioMart
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Abstract
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The aminoacyl-tRNA synthetases (EC:6.1.1.) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology [1]. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric [2]. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [3], and are mostly dimeric or multimeric, containing at least three conserved regions [4, 5, 6]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases [7]. This domain is found in methionyl and leucyl tRNA synthetases.
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Structural links
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Database links
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Pfam Clan: CL0038.10
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Example proteins
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P00958 Methionyl-tRNA synthetase, cytoplasmic
P56192 Methionyl-tRNA synthetase, cytoplasmic
Q09996 Leucyl-tRNA synthetase
Q499X9 Methionyl-tRNA synthetase, mitochondrial
Q9VFL5 Methionyl-tRNA synthetase, mitochondrial
More proteins
Example Proteins Key
| InterPro entry accession number/name and structure databases |
Colour code |
| IPR013155 |
Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding |
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| IPR010987 |
Glutathione S-transferase, C-terminal-like |
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| IPR014729 |
Rossmann-like alpha/beta/alpha sandwich fold |
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| IPR001412 |
Aminoacyl-tRNA synthetase, class I, conserved site |
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| IPR002304 |
Methionyl-tRNA synthetase, class Ia |
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| IPR004493 |
Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic |
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| IPR004046 |
Glutathione S-transferase, C-terminal |
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| IPR014758 |
Methionyl-tRNA synthetase, class Ia, N-terminal |
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| IPR017933 |
Glutathione S-transferase/chloride channel, C-terminal |
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| IPR015413 |
Aminoacyl-tRNA synthetase, class I (M) |
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| IPR000738 |
WHEP-TRS |
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| IPR002300 |
Aminoacyl-tRNA synthetase, class Ia |
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| IPR018285 |
Methionyl-tRNA synthetase, N-terminal heteromerisation domain |
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| IPR009080 |
Aminoacyl-tRNA synthetase, class 1a, anticodon-binding |
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| IPR009068 |
S15/NS1, RNA-binding |
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| IPR009008 |
Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing |
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PDB Chain |
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ModBase |
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SWISS-MODEL |
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Publications
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1.
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Eriani G, Delarue M, Poch O, Gangloff J, Moras D.
Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs.
Nature 347 203-6 1990
[PubMed: 2203971]
http://dx.doi.org/10.1038/347203a0
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2.
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Sugiura I, Nureki O, Ugaji-Yoshikawa Y, Kuwabara S, Shimada A, Tateno M, Lorber B, Giege R, Moras D, Yokoyama S, Konno M.
The 2.0 A crystal structure of Thermus thermophilus methionyl-tRNA synthetase reveals two RNA-binding modules.
Structure 8 197-208 2000
[PubMed: 10673435]
http://dx.doi.org/10.1016/S0969-2126(00)00095-2
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3.
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Perona JJ, Rould MA, Steitz TA.
Structural basis for transfer RNA aminoacylation by Escherichia coli glutaminyl-tRNA synthetase.
Biochemistry 32 8758-71 1993
[PubMed: 8364025]
http://dx.doi.org/10.1021/bi00085a006
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4.
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Delarue M, Moras D.
The aminoacyl-tRNA synthetase family: modules at work.
Bioessays 15 675-87 1993
[PubMed: 8274143]
http://dx.doi.org/10.1002/bies.950151007
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5.
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Schimmel P.
Classes of aminoacyl-tRNA synthetases and the establishment of the genetic code.
Trends Biochem. Sci. 16 1-3 1991
[PubMed: 2053131]
http://dx.doi.org/10.1016/0968-0004(91)90002-D
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6.
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Cusack S, Hartlein M, Leberman R.
Sequence, structural and evolutionary relationships between class 2 aminoacyl-tRNA synthetases.
Nucleic Acids Res. 19 3489-98 1991
[PubMed: 1852601]
http://dx.doi.org/10.1093/nar/19.13.3489
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7.
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Bairoch A.
List of aminoacyl-tRNA synthetases.
2004
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Additional Reading
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Crepin T, Schmitt E, Blanquet S, Mechulam Y.
Three-dimensional structure of methionyl-tRNA synthetase from Pyrococcus abyssi.
Biochemistry 43 2004 2635-44
[PubMed: 14992601]
http://dx.doi.org/10.1021/bi0356247
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Fukunaga R, Yokoyama S.
Crystal structure of leucyl-tRNA synthetase from the archaeon Pyrococcus horikoshii reveals a novel editing domain orientation.
J. Mol. Biol. 346 2005 57-71
[PubMed: 15663927]
http://dx.doi.org/10.1016/j.jmb.2004.11.060
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Serre L, Verdon G, Choinowski T, Hervouet N, Risler JL, Zelwer C.
How methionyl-tRNA synthetase creates its amino acid recognition pocket upon L-methionine binding.
J. Mol. Biol. 306 2001 863-76
[PubMed: 11243794]
http://dx.doi.org/10.1006/jmbi.2001.4408
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Crepin T, Schmitt E, Mechulam Y, Sampson PB, Vaughan MD, Honek JF, Blanquet S.
Use of analogues of methionine and methionyl adenylate to sample conformational changes during catalysis in Escherichia coli methionyl-tRNA synthetase.
J. Mol. Biol. 332 2003 59-72
[PubMed: 12946347]
http://dx.doi.org/10.1016/S0022-2836(03)00917-3
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