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InterPro: IPR015177 Lyase, catalytic

Protein matchesHelp
UniProtKB
Matches:
73 proteins
AccessionHelp IPR015177 Lyase_catalyt
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR012329 Polysaccharide lyase family 8, N-terminal
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

This domain is predominantly found in chondroitin ABC lyase I, adopting a helical structure, with fifteen alpha-helices which are at least two turns long and several short helical turns. The bulk of the domain is formed by ten alpha-helices forming five hairpin-like pairs and arranged into an incomplete toroid, the (alpha/alpha)5 fold. Additionally, two long and two short alpha-helices at the N terminus of the domain wrap around the toroid. At the C-terminal end of the toroid there is one additional short alpha-helix. This domain is required for degradation of polysaccharides containing 1,4-beta-D-hexosaminyl and 1,3-beta-D-glucoronosyl or 1,3-alpha-L-iduronosyl linkages to disaccharides containing 4-deoxy-beta-D-gluc-4-enuronosyl groups [1].

Structural linksHelp
SCOP: a.102.3.2
CATH: 1.50.10.100

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR015177 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
P59807 Chondroitin ABC endolyase 1

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup
IPR012329 Polysaccharide lyase family 8, N-terminal
IPR004103 Polysaccharide lyase family 8, C-terminal
IPR011013 Glycoside hydrolase-type carbohydrate-binding
IPR008929 Chondroitin AC/alginate lyase
IPR011071 Polysaccharide lyase family 8-like, C-terminal
IPR015177 Lyase, catalytic
IPR008979 Galactose-binding domain-like
IPR015176 Lyase, N-terminal
IPR003159 Polysaccharide lyase family 8, central domain
PDB Chain
ModBase
CATH Domain
SCOP Domain

PublicationsHelp
1. Huang W, Lunin VV, Li Y, Suzuki S, Sugiura N, Miyazono H, Cygler M.
Crystal structure of Proteus vulgaris chondroitin sulfate ABC lyase I at 1.9A resolution.
J. Mol. Biol. 328 623-34 2003 [PubMed: 12706721]
http://dx.doi.org/10.1016/S0022-2836(03)00345-0

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InterPro 23.1