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InterPro: IPR013764 Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal

Protein matchesHelp
UniProtKB
Matches:
11978 proteins
AccessionHelp IPR013764 AcylCoA_oxidase/DH_1/2_C
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Children IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal
Found in IPR004925 4-hydroxyphenylacetate 3-hydroxylase
IPR012687 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component
IPR012688 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component gammaproteobacteria
Contains IPR002655 Acyl-CoA oxidase, C-terminal
IPR006089 Acyl-CoA dehydrogenase, conserved site
GO Term annotationHelp
Process GO:0055114 oxidation reduction
Function GO:0016491 oxidoreductase activity
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Acyl-CoA dehydrogenases are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [1] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [2] prefers branched-chain substrates.

The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the number of C-terminal domains. This entry represents the C-terminal domain found in both type 1 and type 2 enzymes.

Structural linksHelp
Database linksHelp
Enzyme: EC:1.3

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR013764 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
P11310 Medium-chain specific acyl-CoA dehydrogenase, mitochondrial

P13711 Acyl-coenzyme A oxidase

P34275 Probable acyl coa dehydrogenase 6

P45952 Medium-chain specific acyl-CoA dehydrogenase, mitochondrial

Q7KML2 Probable peroxisomal acyl-coenzyme A oxidase 1

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR009100 Acyl-CoA dehydrogenase/oxidase
IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal
IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal
IPR006092 Acyl-CoA dehydrogenase, N-terminal
IPR012258 Acyl-CoA oxidase
IPR006090 Acyl-CoA oxidase/dehydrogenase, type 1
IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain
IPR013764 Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal
IPR002655 Acyl-CoA oxidase, C-terminal
IPR006089 Acyl-CoA dehydrogenase, conserved site
PDB Chain
ModBase
CATH Domain
SWISS-MODEL
SCOP Domain

PublicationsHelp
1. Battaile KP, Molin-Case J, Paschke R, Wang M, Bennett D, Vockley J, Kim JJ.
Crystal structure of rat short chain acyl-CoA dehydrogenase complexed with acetoacetyl-CoA: comparison with other acyl-CoA dehydrogenases.
J. Biol. Chem. 277 12200-7 2002 [PubMed: 11812788]
http://dx.doi.org/10.1074/jbc.M111296200
2. Tiffany KA, Roberts DL, Wang M, Paschke R, Mohsen AW, Vockley J, Kim JJ.
Structure of human isovaleryl-CoA dehydrogenase at 2.6 A resolution: structural basis for substrate specificity,.
Biochemistry 36 8455-64 1997 [PubMed: 9214289]
http://dx.doi.org/10.1021/bi970422u

Additional ReadingHelp
Fitzpatrick PF, Bozinovski DM, Heroux A, Shaw PG, Valley MP, Orville AM.
Mechanistic and structural analyses of the roles of Arg409 and Asp402 in the reaction of the flavoprotein nitroalkane oxidase.
Biochemistry 46 2007 13800-8 [PubMed: 17994768]
http://dx.doi.org/10.1021/bi701557k
Powers RA, Rife CL, Schilmiller AL, Howe GA, Garavito RM.
Structure determination and analysis of acyl-CoA oxidase (ACX1) from tomato.
Acta Crystallogr. D Biol. Crystallogr. 62 2006 683-6 [PubMed: 16699197]
http://dx.doi.org/10.1107/S0907444906014107
Tokuoka K, Nakajima Y, Hirotsu K, Miyahara I, Nishina Y, Shiga K, Tamaoki H, Setoyama C, Tojo H, Miura R.
Three-dimensional structure of rat-liver acyl-CoA oxidase in complex with a fatty acid: insights into substrate-recognition and reactivity toward molecular oxygen.
J. Biochem. 139 2006 789-95 [PubMed: 16672280]
http://dx.doi.org/10.1093/jb/mvj088
Nagpal A, Valley MP, Fitzpatrick PF, Orville AM.
Crystal structures of nitroalkane oxidase: insights into the reaction mechanism from a covalent complex of the flavoenzyme trapped during turnover.
Biochemistry 45 2006 1138-50 [PubMed: 16430210]
http://dx.doi.org/10.1021/bi051966w
Rao KS, Fu Z, Albro M, Narayanan B, Baddam S, Lee HJ, Kim JJ, Frerman FE.
The effect of a Glu370Asp mutation in glutaryl-CoA dehydrogenase on proton transfer to the dienolate intermediate.
Biochemistry 46 2007 14468-77 [PubMed: 18020372]
http://dx.doi.org/10.1021/bi7009597
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InterPro 23.1