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InterPro: IPR013764 Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal
Protein matches
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UniProtKB Matches: 11978 proteins |
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Accession
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IPR013764 AcylCoA_oxidase/DH_1/2_C |
Type
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Domain |
Signatures
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InterPro Relationships
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Children
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IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal
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Found in
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IPR004925 4-hydroxyphenylacetate 3-hydroxylase
IPR012687 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component
IPR012688 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component gammaproteobacteria
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Contains
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IPR002655 Acyl-CoA oxidase, C-terminal
IPR006089 Acyl-CoA dehydrogenase, conserved site
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GO Term annotation
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Process
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GO:0055114 oxidation reduction
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Function
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GO:0016491 oxidoreductase activity
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InterPro annotation
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Entry Details in BioMart
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Abstract
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Acyl-CoA dehydrogenases are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [1] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [2] prefers branched-chain substrates.
The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the number of C-terminal domains. This entry represents the C-terminal domain found in both type 1 and type 2 enzymes.
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Structural links
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Database links
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Example proteins
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P11310 Medium-chain specific acyl-CoA dehydrogenase, mitochondrial
P13711 Acyl-coenzyme A oxidase
P34275 Probable acyl coa dehydrogenase 6
P45952 Medium-chain specific acyl-CoA dehydrogenase, mitochondrial
Q7KML2 Probable peroxisomal acyl-coenzyme A oxidase 1
More proteins
Example Proteins Key
| InterPro entry accession number/name and structure databases |
Colour code |
| IPR009100 |
Acyl-CoA dehydrogenase/oxidase |
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| IPR009075 |
Acyl-CoA dehydrogenase/oxidase C-terminal |
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| IPR013786 |
Acyl-CoA dehydrogenase/oxidase, N-terminal |
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| IPR006092 |
Acyl-CoA dehydrogenase, N-terminal |
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| IPR012258 |
Acyl-CoA oxidase |
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| IPR006090 |
Acyl-CoA oxidase/dehydrogenase, type 1 |
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| IPR006091 |
Acyl-CoA oxidase/dehydrogenase, central domain |
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| IPR013764 |
Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal |
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| IPR002655 |
Acyl-CoA oxidase, C-terminal |
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| IPR006089 |
Acyl-CoA dehydrogenase, conserved site |
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PDB Chain |
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ModBase |
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CATH Domain |
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SWISS-MODEL |
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SCOP Domain |
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Publications
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1.
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Battaile KP, Molin-Case J, Paschke R, Wang M, Bennett D, Vockley J, Kim JJ.
Crystal structure of rat short chain acyl-CoA dehydrogenase complexed with acetoacetyl-CoA: comparison with other acyl-CoA dehydrogenases.
J. Biol. Chem. 277 12200-7 2002
[PubMed: 11812788]
http://dx.doi.org/10.1074/jbc.M111296200
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2.
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Tiffany KA, Roberts DL, Wang M, Paschke R, Mohsen AW, Vockley J, Kim JJ.
Structure of human isovaleryl-CoA dehydrogenase at 2.6 A resolution: structural basis for substrate specificity,.
Biochemistry 36 8455-64 1997
[PubMed: 9214289]
http://dx.doi.org/10.1021/bi970422u
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Additional Reading
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Fitzpatrick PF, Bozinovski DM, Heroux A, Shaw PG, Valley MP, Orville AM.
Mechanistic and structural analyses of the roles of Arg409 and Asp402 in the reaction of the flavoprotein nitroalkane oxidase.
Biochemistry 46 2007 13800-8
[PubMed: 17994768]
http://dx.doi.org/10.1021/bi701557k
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Powers RA, Rife CL, Schilmiller AL, Howe GA, Garavito RM.
Structure determination and analysis of acyl-CoA oxidase (ACX1) from tomato.
Acta Crystallogr. D Biol. Crystallogr. 62 2006 683-6
[PubMed: 16699197]
http://dx.doi.org/10.1107/S0907444906014107
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Tokuoka K, Nakajima Y, Hirotsu K, Miyahara I, Nishina Y, Shiga K, Tamaoki H, Setoyama C, Tojo H, Miura R.
Three-dimensional structure of rat-liver acyl-CoA oxidase in complex with a fatty acid: insights into substrate-recognition and reactivity toward molecular oxygen.
J. Biochem. 139 2006 789-95
[PubMed: 16672280]
http://dx.doi.org/10.1093/jb/mvj088
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Nagpal A, Valley MP, Fitzpatrick PF, Orville AM.
Crystal structures of nitroalkane oxidase: insights into the reaction mechanism from a covalent complex of the flavoenzyme trapped during turnover.
Biochemistry 45 2006 1138-50
[PubMed: 16430210]
http://dx.doi.org/10.1021/bi051966w
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Rao KS, Fu Z, Albro M, Narayanan B, Baddam S, Lee HJ, Kim JJ, Frerman FE.
The effect of a Glu370Asp mutation in glutaryl-CoA dehydrogenase on proton transfer to the dienolate intermediate.
Biochemistry 46 2007 14468-77
[PubMed: 18020372]
http://dx.doi.org/10.1021/bi7009597
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InterPro 23.1
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