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InterPro: IPR013528 Hydroxymethylglutaryl-coenzyme A synthase, N-terminal

Protein matchesHelp
UniProtKB
Matches:
651 proteins
AccessionHelp IPR013528 HMG_CoA_synth_N
SecondaryHelp IPR000590 , IPR008260
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Found in IPR004656 Putative condensing enzyme FabH-related
IPR010122 Hydroxymethylglutaryl-CoA synthase, eukaryotic
IPR011554 Hydroxymethylglutaryl-CoA synthase, prokaryotic
Contains IPR000590 Hydroxymethylglutaryl-coenzyme A synthase, active site
IPR016038 Thiolase-like, subgroup
GO Term annotationHelp
Process GO:0008299 isoprenoid biosynthetic process
Function GO:0004421 hydroxymethylglutaryl-CoA synthase activity
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase.

Hydroxymethylglutaryl-CoA synthase (EC:2.3.3.10) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA [1].

HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria [2]. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi [3]. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [4, 5].

This entry represents the N-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.

Structural linksHelp
SCOP: c.95.1.2
Database linksHelp Pfam Clan: CL0046.12

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR013528 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
P54839 Hydroxymethylglutaryl-CoA synthase

P54868 Hydroxymethylglutaryl-CoA synthase, mitochondrial

P54869 Hydroxymethylglutaryl-CoA synthase, mitochondrial

P54871 Hydroxymethylglutaryl-CoA synthase

P54873 Hydroxymethylglutaryl-CoA synthase

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR013528 Hydroxymethylglutaryl-coenzyme A synthase, N-terminal
IPR013746 Hydroxymethylglutaryl-coenzyme A synthase C-terminal
IPR016039 Thiolase-like
IPR000590 Hydroxymethylglutaryl-coenzyme A synthase, active site
IPR010122 Hydroxymethylglutaryl-CoA synthase, eukaryotic
SWISS-MODEL
PDB Chain
ModBase

PublicationsHelp
1. Theisen MJ, Misra I, Saadat D, Campobasso N, Miziorko HM, Harrison DH.
3-hydroxy-3-methylglutaryl-CoA synthase intermediate complex observed in "real-time".
Proc. Natl. Acad. Sci. U.S.A. 101 16442-7 2004 [PubMed: 15498869]
http://dx.doi.org/10.1073/pnas.0405809101
2. Bahnson BJ.
An atomic-resolution mechanism of 3-hydroxy-3-methylglutaryl-CoA synthase.
Proc. Natl. Acad. Sci. U.S.A. 101 16399-400 2004 [PubMed: 15546978]
http://dx.doi.org/10.1073/pnas.0407418101
3. Bearfield JC, Keeling CI, Young S, Blomquist GJ, Tittiger C.
Isolation, endocrine regulation and mRNA distribution of the 3-hydroxy-3-methylglutaryl coenzyme A synthase (HMG-S) gene from the pine engraver, Ips pini (Coleoptera: Scolytidae).
Insect Mol. Biol. 15 187-95 2006 [PubMed: 16640729]
http://dx.doi.org/10.1111/j.1365-2583.2006.00627.x
4. Steussy CN, Robison AD, Tetrick AM, Knight JT, Rodwell VW, Stauffacher CV, Sutherlin AL.
A structural limitation on enzyme activity: the case of HMG-CoA synthase.
Biochemistry 45 14407-14 2006 [PubMed: 17128980]
http://dx.doi.org/10.1021/bi061505q
5. Steussy CN, Vartia AA, Burgner JW 2nd, Sutherlin A, Rodwell VW, Stauffacher CV.
X-ray crystal structures of HMG-CoA synthase from Enterococcus faecalis and a complex with its second substrate/inhibitor acetoacetyl-CoA.
Biochemistry 44 14256-67 2005 [PubMed: 16245942]
http://dx.doi.org/10.1021/bi051487x

Additional ReadingHelp
Campobasso N, Patel M, Wilding IE, Kallender H, Rosenberg M, Gwynn MN.
Staphylococcus aureus 3-hydroxy-3-methylglutaryl-CoA synthase: crystal structure and mechanism.
J. Biol. Chem. 279 2004 44883-8 [PubMed: 15292254]
http://dx.doi.org/10.1074/jbc.M407882200
Miziorko HM, Behnke CE.
Amino acid sequence of an active site peptide of avian liver mitochondrial 3-hydroxy-3-methylglutaryl-CoA synthase.
J. Biol. Chem. 260 1985 13513-6 [PubMed: 2865259]
http://intl.jbc.org/cgi/reprint/260/25/13513.pdf
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InterPro 23.1