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InterPro: IPR013216 Methyltransferase type 11

Protein matchesHelp
UniProtKB
Matches:
20140 proteins
AccessionHelp IPR013216 Methyltransf_11
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Found in IPR005271 tRNA (cmo5U34)-methyltransferase
IPR010233 Ubiquinone biosynthesis O-methyltransferase
IPR011814 Biotin biosynthesis protein BioC
IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted
IPR016885 Uncharacterised conserved protein UCP028445
IPR017031 S-adenosyl-L-methionine dependent methyltransferase, YjhP, predicted
IPR020027 Pseudaminic acid biosynthesis-associated methyltransferase
GO Term annotationHelp
Process GO:0008152 metabolic process
Function GO:0008168 methyltransferase activity
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented.

This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to:

  • Arsenite methyltransferase (EC:2.1.1.137) which converts arsenical compounds to their methylated forms [1]
  • Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [2]
  • Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [3]
  • Hexaprenyldihydroxybenzoate methyltransferase (EC:2.1.1.114), a mitochodrial enzyme involved in ubiquinone biosynthesis [4]
  • A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [5]
  • Sterol 24-C-methyltransferase (EC:2.1.1.41), shown to participate in ergosterol biosynthesis [6]
  • 3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64) involved in ubiquinone biosynthesis [7]
Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [8, 9, 10].

Structural linksHelp
CATH: 3.40.50.150
Database linksHelp
Enzyme: EC:2.1.1
Blocks: IPB013216
Pfam Clan: CL0102.19

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR013216 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
A2APY7 Probable methyltransferase C20orf7 homolog, mitochondrial

O49354 Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial

O60344 Endothelin-converting enzyme 2

P32643 Trans-aconitate 3-methyltransferase

Q9VIK9 Methyltransferase-like protein 13

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR010233 Ubiquinone biosynthesis O-methyltransferase
IPR018497 Peptidase M13, neprilysin, C-terminal
IPR001045 Spermine synthase
IPR000718 Peptidase M13, neprilysin
IPR008753 Peptidase M13
IPR013216 Methyltransferase type 11
SWISS-MODEL
PDB Chain
ModBase

PublicationsHelp
1. Lin S, Shi Q, Nix FB, Styblo M, Beck MA, Herbin-Davis KM, Hall LL, Simeonsson JB, Thomas DJ.
A novel S-adenosyl-L-methionine:arsenic(III) methyltransferase from rat liver cytosol.
J. Biol. Chem. 277 10795-803 2002 [PubMed: 11790780]
http://dx.doi.org/10.1074/jbc.M110246200
2. Wu CH, Bao YY, Shao CP, Shiuan D.
Molecular cloning and nucleotide sequencing of bioF (7-keto-8-amino pelargonic acid synthetase), bioC and bioD (dethiobiotin synthetase) genes of Erwinia herbicola.
Biochem. Mol. Biol. Int. 41 311-5 1997 [PubMed: 9063571]
3. Pawlak MR, Scherer CA, Chen J, Roshon MJ, Ruley HE.
Arginine N-methyltransferase 1 is required for early postimplantation mouse development, but cells deficient in the enzyme are viable.
Mol. Cell. Biol. 20 4859-69 2000 [PubMed: 10848611]
http://dx.doi.org/10.1128/MCB.20.13.4859-4869.2000
4. Poon WW, Barkovich RJ, Hsu AY, Frankel A, Lee PT, Shepherd JN, Myles DC, Clarke CF.
Yeast and rat Coq3 and Escherichia coli UbiG polypeptides catalyze both O-methyltransferase steps in coenzyme Q biosynthesis.
J. Biol. Chem. 274 21665-72 1999 [PubMed: 10419476]
http://dx.doi.org/10.1074/jbc.274.31.21665
5. Roth JR, Lawrence JG, Rubenfield M, Kieffer-Higgins S, Church GM.
Characterization of the cobalamin (vitamin B12) biosynthetic genes of Salmonella typhimurium.
J. Bacteriol. 175 3303-16 1993 [PubMed: 8501034]
http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=EBI&pubmedid=8501034
6. Jensen-Pergakes KL, Kennedy MA, Lees ND, Barbuch R, Koegel C, Bard M.
Sequencing, disruption, and characterization of the Candida albicans sterol methyltransferase (ERG6) gene: drug susceptibility studies in erg6 mutants.
Antimicrob. Agents Chemother. 42 1160-7 1998 [PubMed: 9593144]
http://www.pubmedcentral.nih.gov/picrender.fcgi?tool=EBI&pubmedid=9593144&action=stream&blobtype=pdf
7. Wu G, Williams HD, Zamanian M, Gibson F, Poole RK.
Isolation and characterization of Escherichia coli mutants affected in aerobic respiration: the cloning and nucleotide sequence of ubiG. Identification of an S-adenosylmethionine-binding motif in protein, RNA, and small-molecule methyltransferases.
J. Gen. Microbiol. 138 2101-12 1992 [PubMed: 1479344]
8. Zhang X, Cheng X.
Structure of the predominant protein arginine methyltransferase PRMT1 and analysis of its binding to substrate peptides.
Structure 11 509-20 2003 [PubMed: 12737817]
http://dx.doi.org/10.1016/S0969-2126(03)00071-6
9. Das K, Acton T, Chiang Y, Shih L, Arnold E, Montelione GT.
Crystal structure of RlmAI: implications for understanding the 23S rRNA G745/G748-methylation at the macrolide antibiotic-binding site.
Proc. Natl. Acad. Sci. U.S.A. 101 4041-6 2004 [PubMed: 14999102]
http://dx.doi.org/10.1073/pnas.0400189101
10. Keller JP, Smith PM, Benach J, Christendat D, deTitta GT, Hunt JF.
The crystal structure of MT0146/CbiT suggests that the putative precorrin-8w decarboxylase is a methyltransferase.
Structure 10 1475-87 2002 [PubMed: 12429089]
http://dx.doi.org/10.1016/S0969-2126(02)00876-6

Additional ReadingHelp
Zhang X, Zhou L, Cheng X.
Crystal structure of the conserved core of protein arginine methyltransferase PRMT3.
EMBO J. 19 2000 3509-19 [PubMed: 10899106]
http://dx.doi.org/10.1093/emboj/19.14.3509
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