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InterPro: IPR013094 Alpha/beta hydrolase fold-3

Protein matchesHelp
UniProtKB
Matches:
4450 proteins
AccessionHelp IPR013094 AB_hydrolase_3
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Found in IPR017157 Arylacetamide deacetylase
Contains IPR002168 Lipase, GDXG, active site
GO Term annotationHelp
Process GO:0008152 metabolic process
Function GO:0016787 hydrolase activity
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

The alpha/beta hydrolase fold [1] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices [1]. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes [2].

In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [3] gathers and annotates all the published information related to gene and protein sequences of this superfamily [4].

This entry represents the catalytic domain fold-3 of alpha/beta hydrolase.

Structural linksHelp
SCOP: c.69.1.2
CATH: 3.40.50.1820
Database linksHelp
Enzyme: EC:3.1.1
PANDIT: PF07859
Blocks: IPB013094
Pfam Clan: CL0028.18

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR013094 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
P22760 Arylacetamide deacetylase

P54310 Hormone-sensitive lipase

Q6L545 Gibberellin receptor GID1

Q8ZRA1 Acetyl esterase

Q9MAA7 Probable gibberellin receptor GID1L1

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR013094 Alpha/beta hydrolase fold-3
IPR017157 Arylacetamide deacetylase
IPR002168 Lipase, GDXG, active site
IPR010468 Hormone-sensitive lipase, N-terminal
SWISS-MODEL
PDB Chain
ModBase

PublicationsHelp
1. Ollis DL, Cheah E, Cygler M, Dijkstra B, Frolow F, Franken SM, Harel M, Remington SJ, Silman I, Schrag J.
The alpha/beta hydrolase fold.
Protein Eng. 5 197-211 1992 [PubMed: 1409539]
http://dx.doi.org/10.1093/protein/5.3.197
2. Elmi F, Lee HT, Huang JY, Hsieh YC, Wang YL, Chen YJ, Shaw SY, Chen CJ.
Stereoselective esterase from Pseudomonas putida IFO12996 reveals alpha/beta hydrolase folds for D-beta-acetylthioisobutyric acid synthesis.
J. Bacteriol. 187 8470-6 2005 [PubMed: 16321951]
http://dx.doi.org/10.1128/JB.187.24.8470-8476.2005
4. Hotelier T, Renault L, Cousin X, Negre V, Marchot P, Chatonnet A.
ESTHER, the database of the alpha/beta-hydrolase fold superfamily of proteins.
Nucleic Acids Res. 32 D145-7 2004 [PubMed: 14681380]
http://dx.doi.org/10.1093/nar/gkh141

Additional ReadingHelp
Mandrich L, Menchise V, Alterio V, De Simone G, Pedone C, Rossi M, Manco G.
Functional and structural features of the oxyanion hole in a thermophilic esterase from Alicyclobacillus acidocaldarius.
Proteins 71 2008 1721-31 [PubMed: 18076040]
http://dx.doi.org/10.1002/prot.21877
Zhu X, Larsen NA, Basran A, Bruce NC, Wilson IA.
Observation of an arsenic adduct in an acetyl esterase crystal structure.
J. Biol. Chem. 278 2003 2008-14 [PubMed: 12421810]
http://dx.doi.org/10.1074/jbc.M210103200
De Simone G, Menchise V, Alterio V, Mandrich L, Rossi M, Manco G, Pedone C.
The crystal structure of an EST2 mutant unveils structural insights on the H group of the carboxylesterase/lipase family.
J. Mol. Biol. 343 2004 137-46 [PubMed: 15381425]
http://dx.doi.org/10.1016/j.jmb.2004.08.014
Byun JS, Rhee JK, Kim ND, Yoon J, Kim DU, Koh E, Oh JW, Cho HS.
Crystal structure of hyperthermophilic esterase EstE1 and the relationship between its dimerization and thermostability properties.
BMC Struct. Biol. 7 2007 47 [PubMed: 17625021]
http://dx.doi.org/10.1186/1472-6807-7-47
De Simone G, Mandrich L, Menchise V, Giordano V, Febbraio F, Rossi M, Pedone C, Manco G.
A substrate-induced switch in the reaction mechanism of a thermophilic esterase: kinetic evidences and structural basis.
J. Biol. Chem. 279 2004 6815-23 [PubMed: 14617621]
http://dx.doi.org/10.1074/jbc.M307738200
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InterPro 23.1