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InterPro: IPR013094 Alpha/beta hydrolase fold-3
Protein matches
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UniProtKB Matches: 4450 proteins |
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Accession
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IPR013094 AB_hydrolase_3 |
Type
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Domain |
Signatures
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InterPro Relationships
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Found in
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IPR017157 Arylacetamide deacetylase
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Contains
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IPR002168 Lipase, GDXG, active site
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GO Term annotation
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Process
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GO:0008152 metabolic process
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Function
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GO:0016787 hydrolase activity
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InterPro annotation
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Entry Details in BioMart
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Abstract
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The alpha/beta hydrolase fold [1] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices [1]. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes [2].
In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [3] gathers and annotates all the published information related to gene and protein sequences of this superfamily [4]. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase.
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Structural links
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Database links
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Pfam Clan: CL0028.18
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Publications
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1.
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Ollis DL, Cheah E, Cygler M, Dijkstra B, Frolow F, Franken SM, Harel M, Remington SJ, Silman I, Schrag J.
The alpha/beta hydrolase fold.
Protein Eng. 5 197-211 1992
[PubMed: 1409539]
http://dx.doi.org/10.1093/protein/5.3.197
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2.
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Elmi F, Lee HT, Huang JY, Hsieh YC, Wang YL, Chen YJ, Shaw SY, Chen CJ.
Stereoselective esterase from Pseudomonas putida IFO12996 reveals alpha/beta hydrolase folds for D-beta-acetylthioisobutyric acid synthesis.
J. Bacteriol. 187 8470-6 2005
[PubMed: 16321951]
http://dx.doi.org/10.1128/JB.187.24.8470-8476.2005
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4.
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Hotelier T, Renault L, Cousin X, Negre V, Marchot P, Chatonnet A.
ESTHER, the database of the alpha/beta-hydrolase fold superfamily of proteins.
Nucleic Acids Res. 32 D145-7 2004
[PubMed: 14681380]
http://dx.doi.org/10.1093/nar/gkh141
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Additional Reading
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Mandrich L, Menchise V, Alterio V, De Simone G, Pedone C, Rossi M, Manco G.
Functional and structural features of the oxyanion hole in a thermophilic esterase from Alicyclobacillus acidocaldarius.
Proteins 71 2008 1721-31
[PubMed: 18076040]
http://dx.doi.org/10.1002/prot.21877
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Zhu X, Larsen NA, Basran A, Bruce NC, Wilson IA.
Observation of an arsenic adduct in an acetyl esterase crystal structure.
J. Biol. Chem. 278 2003 2008-14
[PubMed: 12421810]
http://dx.doi.org/10.1074/jbc.M210103200
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De Simone G, Menchise V, Alterio V, Mandrich L, Rossi M, Manco G, Pedone C.
The crystal structure of an EST2 mutant unveils structural insights on the H group of the carboxylesterase/lipase family.
J. Mol. Biol. 343 2004 137-46
[PubMed: 15381425]
http://dx.doi.org/10.1016/j.jmb.2004.08.014
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Byun JS, Rhee JK, Kim ND, Yoon J, Kim DU, Koh E, Oh JW, Cho HS.
Crystal structure of hyperthermophilic esterase EstE1 and the relationship between its dimerization and thermostability properties.
BMC Struct. Biol. 7 2007 47
[PubMed: 17625021]
http://dx.doi.org/10.1186/1472-6807-7-47
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De Simone G, Mandrich L, Menchise V, Giordano V, Febbraio F, Rossi M, Pedone C, Manco G.
A substrate-induced switch in the reaction mechanism of a thermophilic esterase: kinetic evidences and structural basis.
J. Biol. Chem. 279 2004 6815-23
[PubMed: 14617621]
http://dx.doi.org/10.1074/jbc.M307738200
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InterPro 23.1
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