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InterPro: IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase

Protein matchesHelp
UniProtKB
Matches:
30695 proteins
AccessionHelp IPR013027 FAD_pyr_nucl-diS_OxRdtase
SecondaryHelp IPR001327
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Children IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II
Found in IPR000815 Mercuric reductase
IPR001864 Trypanothione reductase
IPR005982 Thioredoxin reductase
IPR006004 Glutamate synthase (NADPH), homotetrameric
IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2
IPR006258 Dihydrolipoamide dehydrogenase
IPR006322 Glutathione reductase, animal/bacterial
IPR006324 Glutathione reductase, plant
IPR006338 Thioredoxin/glutathione reductase selenoprotein
IPR011796 Mercuric reductase MerA
IPR012220 Glutamate synthase, eukaryotic
IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB
IPR015723 Glutathione reductase
IPR017121 Nitrite reductase [NAD(P)H], large subunit
IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B
IPR017584 Pyridine nucleotide-disulphide oxidoreductase family protein, N-terminal
IPR017701 Putative selenate reductase YgfK
IPR017758 Coenzyme A disulphide reductase
IPR017817 Mycothione reductase
Contains IPR000759 Adrenodoxin reductase
IPR001327 Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region
IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site
IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site
IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site
InterPro annotation
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AbstractHelp

This entry describes both class I and class II oxidoreductases. FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [1, 2, 3]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently [3].

Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [4] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) [5]. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR.

To date, 3D structures of glutathione reductase [6], thioredoxin reductase [3], mercuric reductase [7], lipoamide dehydrogenase [8], trypanothione reductase [9] and NADH peroxidase [10] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication [11].

Structural linksHelp
PDB - click here
Database linksHelp
PANDIT: PF07992
Blocks: IPB013027
Pfam Clan: CL0063.21

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR013027 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O95831 Apoptosis-inducing factor 1, mitochondrial

P09624 Dihydrolipoyl dehydrogenase, mitochondrial

P30635 Probable glutathione reductase 2

P91938 Thioredoxin reductase 1, mitochondrial

Q9JLT4 Thioredoxin reductase 2, mitochondrial

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR016156 FAD/NAD-linked reductase, dimerisation
IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site
IPR006338 Thioredoxin/glutathione reductase selenoprotein
IPR000815 Mercuric reductase
IPR006258 Dihydrolipoamide dehydrogenase
IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation
IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
IPR001327 Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region
PDB Chain
ModBase
CATH Domain
SWISS-MODEL
SCOP Domain

PublicationsHelp
1. Eggink G, Engel H, Vriend G, Terpstra P, Witholt B.
Rubredoxin reductase of Pseudomonas oleovorans. Structural relationship to other flavoprotein oxidoreductases based on one NAD and two FAD fingerprints.
J. Mol. Biol. 212 135-42 1990 [PubMed: 2319593]
http://dx.doi.org/10.1016/0022-2836(90)90310-I
2. Ross RP, Claiborne A.
Molecular cloning and analysis of the gene encoding the NADH oxidase from Streptococcus faecalis 10C1. Comparison with NADH peroxidase and the flavoprotein disulfide reductases.
J. Mol. Biol. 227 658-71 1992 [PubMed: 1404382]
http://dx.doi.org/10.1016/0022-2836(92)90215-6
3. Kuriyan J, Krishna TS, Wong L, Guenther B, Pahler A, Williams CH Jr, Model P.
Convergent evolution of similar function in two structurally divergent enzymes.
Nature 352 172-4 1991 [PubMed: 2067578]
http://dx.doi.org/10.1038/352172a0
4. Hanukoglu I, Gutfinger T.
cDNA sequence of adrenodoxin reductase. Identification of NADP-binding sites in oxidoreductases.
Eur. J. Biochem. 180 479-84 1989 [PubMed: 2924777]
http://dx.doi.org/10.1111/j.1432-1033.1989.tb14671.x
5. Hyde GE, Crawford NM, Campbell WH.
The sequence of squash NADH:nitrate reductase and its relationship to the sequences of other flavoprotein oxidoreductases. A family of flavoprotein pyridine nucleotide cytochrome reductases.
J. Biol. Chem. 266 23542-7 1991 [PubMed: 1748631]
http://intl.jbc.org/cgi/reprint/266/35/23542.pdf
6. Karplus PA, Schulz GE.
Refined structure of glutathione reductase at 1.54 A resolution.
J. Mol. Biol. 195 701-29 1987 [PubMed: 3656429]
http://dx.doi.org/10.1016/0022-2836(87)90191-4
7. Schiering N, Kabsch W, Moore MJ, Distefano MD, Walsh CT, Pai EF.
Structure of the detoxification catalyst mercuric ion reductase from Bacillus sp. strain RC607.
Nature 352 168-72 1991 [PubMed: 2067577]
http://dx.doi.org/10.1038/352168a0
8. Mattevi A, Schierbeek AJ, Hol WG.
Refined crystal structure of lipoamide dehydrogenase from Azotobacter vinelandii at 2.2 A resolution. A comparison with the structure of glutathione reductase.
J. Mol. Biol. 220 975-94 1991 [PubMed: 1880807]
http://dx.doi.org/10.1016/0022-2836(91)90367-F
9. Kuriyan J, Kong XP, Krishna TS, Sweet RM, Murgolo NJ, Field H, Cerami A, Henderson GB.
X-ray structure of trypanothione reductase from Crithidia fasciculata at 2.4-A resolution.
Proc. Natl. Acad. Sci. U.S.A. 88 8764-8 1991 [PubMed: 1924336]
http://ukpmc.ac.uk/articlerender.cgi?tool=EBI&pubmedid=1924336
10. Stehle T, Ahmed SA, Claiborne A, Schulz GE.
Structure of NADH peroxidase from Streptococcus faecalis 10C1 refined at 2.16 A resolution.
J. Mol. Biol. 221 1325-44 1991 [PubMed: 1942054]
11. Schulz GE.
Gene duplication in glutathione reductase.
J. Mol. Biol. 138 335-47 1980 [PubMed: 7411611]
http://dx.doi.org/10.1016/0022-2836(80)90290-9

Additional ReadingHelp
Petsko GA.
Enzyme evolution. Deja vu all over again.
Nature 352 1991 104-5 [PubMed: 2067568]
http://dx.doi.org/10.1038/352104a0
Mande SS, Sarfaty S, Allen MD, Perham RN, Hol WG.
Protein-protein interactions in the pyruvate dehydrogenase multienzyme complex: dihydrolipoamide dehydrogenase complexed with the binding domain of dihydrolipoamide acetyltransferase.
Structure 4 1996 277-86 [PubMed: 8805537]
http://dx.doi.org/10.1016/S0969-2126(96)00032-9
Senda M, Kishigami S, Kimura S, Fukuda M, Ishida T, Senda T.
Molecular mechanism of the redox-dependent interaction between NADH-dependent ferredoxin reductase and Rieske-type [2Fe-2S] ferredoxin.
J. Mol. Biol. 373 2007 382-400 [PubMed: 17850818]
http://dx.doi.org/10.1016/j.jmb.2007.08.002
Tomasiak TM, Maklashina E, Cecchini G, Iverson TM.
A threonine on the active site loop controls transition state formation in Escherichia coli respiratory complex II.
J. Biol. Chem. 283 2008 15460-8 [PubMed: 18385138]
http://dx.doi.org/10.1074/jbc.M801372200
Gustafsson TN, Sandalova T, Lu J, Holmgren A, Schneider G.
High-resolution structures of oxidized and reduced thioredoxin reductase from Helicobacter pylori.
Acta Crystallogr. D Biol. Crystallogr. 63 2007 833-43 [PubMed: 17582174]
http://dx.doi.org/10.1107/S0907444907026303
Fritz-Wolf K, Urig S, Becker K.
The structure of human thioredoxin reductase 1 provides insights into C-terminal rearrangements during catalysis.
J. Mol. Biol. 370 2007 116-27 [PubMed: 17512005]
http://dx.doi.org/10.1016/j.jmb.2007.04.044
Eckenroth BE, Rould MA, Hondal RJ, Everse SJ.
Structural and biochemical studies reveal differences in the catalytic mechanisms of mammalian and Drosophila melanogaster thioredoxin reductases.
Biochemistry 46 2007 4694-705 [PubMed: 17385893]
http://dx.doi.org/10.1021/bi602394p
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InterPro 23.1