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InterPro: IPR012669 Pectic acid lyase

Protein matches Help

UniProtKB

Matches:

111 proteins

Overview:	sorted by AC,	sorted by name,	of known structure,	proteins with splice variants
Detailed:	sorted by AC,	sorted by name,	of known structure	proteins with splice variants
Table:	For all matching proteins,	of known structure
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Accession List
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Accession

IPR012669 Pectate_lyase

Type

Family

Signatures Help

Database	ID	Name	Proteins
Pfam	PF09492	Pec_lyase	111
TIGRFAMs	TIGR02474	pec_lyase	89
Signatures in BioMart

InterPro annotation

Entry Details in BioMart

Abstract

Members of this family are isozymes of pectate lyase (EC:4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.

Structural links Help

PDB - click here

SCOP: a.102.5.1

CATH: 1.50.10.20

Taxonomic coverage Help

Example proteins Help

Q9F7L3 Pectate lyase

More proteins

Example Proteins Key

InterPro entry accession number/name and structure databases		Colour code
IPR008965	Carbohydrate-binding
IPR008979	Galactose-binding domain-like
IPR012291	Cellulose-binding family II/chitobiase, carbohydrate-binding domain
IPR012669	Pectic acid lyase
IPR001919	Cellulose-binding domain, family II, bacterial type
IPR018366	Carbohydrate-binding type-2, conserved site
IPR005084	Carbohydrate binding domain, family 6
	SWISS-MODEL
	PDB Chain
	ModBase
	SCOP Domain
	CATH Domain

Publications Help

Additional Reading Open in usermanual
	Novoa De Armas H, Verboven C, De Ranter C, Desair J, Vande Broek A, Vanderleyden J, Rabijns A. Azospirillum irakense pectate lyase displays a toroidal fold. Acta Crystallogr. D Biol. Crystallogr. 60 2004 999-1007 [PubMed: 15159558] http://dx.doi.org/10.1107/S090744490400602X
	Charnock SJ, Brown IE, Turkenburg JP, Black GW, Davies GJ. Convergent evolution sheds light on the anti-beta -elimination mechanism common to family 1 and 10 polysaccharide lyases. Proc. Natl. Acad. Sci. U.S.A. 99 2002 12067-72 [PubMed: 12221284] http://dx.doi.org/10.1073/pnas.182431199
	Bekri MA, Desair J, Keijers V, Proost P, Searle-van Leeuwen M, Vanderleyden J, Vande Broek A. Azospirillum irakense produces a novel type of pectate lyase. J. Bacteriol. 181 1999 2440-7 [PubMed: 10198006] http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=EBI&pubmedid=10198006
	Sawada K, Ogawa A, Ozawa T, Sumitomo N, Hatada Y, Kobayashi T, Ito S. Nucleotide and amino-acid sequences of a new-type pectate lyase from an alkaliphilic strain of Bacillus. Eur. J. Biochem. 267 2000 1510-5 [PubMed: 10691990] http://dx.doi.org/10.1046/j.1432-1327.2000.01146.x

InterPro 23.1