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InterPro: IPR011989 Armadillo-like helical

Protein matchesHelp
UniProtKB
Matches:
13672 proteins
AccessionHelp IPR011989 ARM-like
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR016024 Armadillo-type fold
Found in IPR002553 Clathrin/coatomer adaptor, adaptin-like, N-terminal
IPR004908 ATPase, V1 complex, subunit H
IPR006911 Protein of unknown function DUF634
IPR007673 Non-SMC condensin subunit, XCAP-D2/Cnd1
IPR008658 Kinesin-associated
IPR008665 LRV FeS4 cluster
IPR011959 Conserved hypothetical protein CHP02270
IPR013284 Beta-catenin
IPR016342 Adaptor protein complex, beta subunit
IPR016460 Coatomer, beta subunit
IPR016642 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit
IPR017104 Adaptor protein complex AP-2, alpha subunit
IPR017105 Adaptor protein complex AP-3, delta subunit
IPR017106 Coatomer, gamma subunit
IPR017107 Adaptor protein complex AP-1, gamma subunit
IPR017108 Adaptor protein complex AP-3, beta subunit
IPR017109 Adaptor protein complex AP-4, epsilon subunit
Contains IPR000225 Armadillo
IPR000357 HEAT
IPR001313 Pumilio RNA-binding repeat
IPR001494 Importin-beta, N-terminal
IPR004155 PBS lyase HEAT-like repeat
IPR004830 Leucine rich repeat variant
IPR005043 CAS/CSE, C-terminal
IPR007205 Uncharacterised protein family UPF0507
IPR007206 Uncharacterised protein family UPF0507, C-terminal
IPR013598 Exportin-1/Importin-beta-like
IPR013713 Exportin, Cse1-like
IPR013918 Nucleotide exchange factor Fes1
IPR013932 TATA-binding protein interacting (TIP20)
IPR014877 Exportin 1, C-terminal
IPR021133 HEAT, type 2
GO Term annotationHelp
Function GO:0005488 binding
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

This domain consists of a multi-helical fold comprised of two curved layers of alpha helices arranged in a regular right-handed superhelix, where the repeats that make up this structure are arranged about a common axis [1]. These superhelical structures present an extensive solvent-accessible surface that is well suited to binding large substrates such as proteins and nucleic acids. This topology has been found with a number of repeats and domains, including the armadillo repeat (found in beta-catenins and importins), the HEAT repeat (found in protein phosphatase 2a and initiation factor eIF4G), the PHAT domain (found in Smaug RNA-binding protein), the leucine-rich repeat variant, the Pumilo repeat, and in the H regulatory subunit of V-type ATPases. The sequence similarity among these different repeats or domains is low, however they exhibit considerable structural similarity. Furthermore, the number of repeats present in the superhelical structure can vary between orthologues, indicating that rapid loss/gain of repeats has occurred frequently in evolution. A common phylogenetic origin has been proposed for the armadillo and HEAT repeats [2].

Structural linksHelp
PDB - click here
CATH: 1.25.10.10

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR011989 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
O14980 Exportin-1

O44326 Protein humpback-2

P16521 Elongation factor 3A

P17427 AP-2 complex subunit alpha-2

P25822 Maternal protein pumilio

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR008152 Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain
IPR000225 Armadillo
IPR013284 Beta-catenin
IPR002553 Clathrin/coatomer adaptor, adaptin-like, N-terminal
IPR013598 Exportin-1/Importin-beta-like
IPR015688 Elongation Factor 3
IPR017871 ABC transporter, conserved site
IPR017104 Adaptor protein complex AP-2, alpha subunit
IPR015873 Clathrin alpha-adaptin/coatomer adaptor, appendage, C-terminal subdomain
IPR011989 Armadillo-like helical
IPR001494 Importin-beta, N-terminal
IPR009028 Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain
IPR013038 Clathrin adaptor, alpha-adaptin, appendage, Ig-like subdomain
IPR001313 Pumilio RNA-binding repeat
IPR003593 ATPase, AAA+ type, core
IPR003439 ABC transporter-like
IPR016024 Armadillo-type fold
IPR014877 Exportin 1, C-terminal
IPR003164 Clathrin adaptor, alpha-adaptin, appendage, C-terminal subdomain
IPR013041 Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain
IPR021133 HEAT, type 2
ModBase
SWISS-MODEL
PDB Chain
CATH Domain
SCOP Domain

PublicationsHelp
1. Groves MR, Barford D.
Topological characteristics of helical repeat proteins.
Curr. Opin. Struct. Biol. 9 383-9 1999 [PubMed: 10361086]
http://dx.doi.org/10.1016/S0959-440X(99)80052-9
2. Andrade MA, Perez-Iratxeta C, Ponting CP.
Protein repeats: structures, functions, and evolution.
J. Struct. Biol. 134 117-31 2001 [PubMed: 11551174]
http://dx.doi.org/10.1006/jsbi.2001.4392

Additional ReadingHelp
Gupta YK, Nair DT, Wharton RP, Aggarwal AK.
Structures of human Pumilio with noncognate RNAs reveal molecular mechanisms for binding promiscuity.
Structure 16 2008 549-57 [PubMed: 18328718]
http://dx.doi.org/10.1016/j.str.2008.01.006
Xu Y, Chen Y, Zhang P, Jeffrey PD, Shi Y.
Structure of a protein phosphatase 2A holoenzyme: insights into B55-mediated Tau dephosphorylation.
Mol. Cell 31 2008 873-85 [PubMed: 18922469]
http://dx.doi.org/10.1016/j.molcel.2008.08.006
Forwood JK, Lonhienne TG, Marfori M, Robin G, Meng W, Guncar G, Liu SM, Stewart M, Carroll BJ, Kobe B.
Kap95p binding induces the switch loops of RanGDP to adopt the GTP-bound conformation: implications for nuclear import complex assembly dynamics.
J. Mol. Biol. 383 2008 772-82 [PubMed: 18708071]
http://dx.doi.org/10.1016/j.jmb.2008.07.090
Mitrousis G, Olia AS, Walker-Kopp N, Cingolani G.
Molecular basis for the recognition of snurportin 1 by importin beta.
J. Biol. Chem. 283 2008 7877-84 [PubMed: 18187419]
http://dx.doi.org/10.1074/jbc.M709093200
Tarendeau F, Boudet J, Guilligay D, Mas PJ, Bougault CM, Boulo S, Baudin F, Ruigrok RW, Daigle N, Ellenberg J, Cusack S, Simorre JP, Hart DJ.
Structure and nuclear import function of the C-terminal domain of influenza virus polymerase PB2 subunit.
Nat. Struct. Mol. Biol. 14 2007 229-33 [PubMed: 17310249]
http://dx.doi.org/10.1038/nsmb1212
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InterPro 24.0