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InterPro: IPR011707 Multicopper oxidase, type 3

Protein matchesHelp
UniProtKB
Matches:
4712 proteins
AccessionHelp IPR011707 Cu-oxidase_3
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Found in IPR001287 Copper-containing nitrite reductase, N-terminal
IPR006376 Copper-resistance protein CopA
IPR008972 Cupredoxin
IPR012746 Nitrite reductase, copper containing
IPR014707 Coagulation factor VIII
IPR017760 L-ascorbate oxidase, plants
IPR017761 Laccase
IPR017762 L-ascorbate oxidase, fungi
Contains IPR002355 Multicopper oxidase, copper-binding site
GO Term annotationHelp
Process GO:0055114 oxidation reduction
Function GO:0005507 copper ion binding
GO:0016491 oxidoreductase activity
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment.

Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water [1]. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [2, 3]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel [4]. Multicopper oxidases include:

  • Ceruloplasmin (EC:1.16.3.1) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase.
  • Laccase (EC:1.10.3.2) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance [4].
  • Ascorbate oxidase (EC:1.10.3.3), a 3-domain enzyme found in higher plants.
  • Nitrite reductase (EC:1.7.2.1), a 2-domain enzyme containing type-1 and type-2 copper centres [5, 6].

In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) [7]; yeast FET3 required for ferrous iron uptake [8]; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08.

This entry represents multicopper oxidase type 3 (or coupled binuclear) domains.

Structural linksHelp
PDB - click here
SCOP: b.6.1.3
CATH: 2.60.40.420
Database linksHelp
Enzyme: EC:1
PANDIT: PF07732
Blocks: IPB011707
Pfam Clan: CL0026.16

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR011707 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
A2XCN6 Putative laccase-18

O80434 Laccase-4

O88783 Coagulation factor V

P00450 Ceruloplasmin

P38993 Iron transport multicopper oxidase FET3

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR000421 Coagulation factor 5/8 type, C-terminal
IPR002355 Multicopper oxidase, copper-binding site
IPR011706 Multicopper oxidase, type 2
IPR011707 Multicopper oxidase, type 3
IPR001117 Multicopper oxidase, type 1
IPR008979 Galactose-binding domain-like
IPR017761 Laccase
IPR008972 Cupredoxin
IPR009271 Coagulation factor V LSPD
PDB Chain
ModBase
CATH Domain
SWISS-MODEL
SCOP Domain

PublicationsHelp
1. Bento I, Martins LO, Gato Lopes G, Armenia Carrondo M, Lindley PF.
Dioxygen reduction by multi-copper oxidases; a structural perspective.
3507-13 2005 [PubMed: 16234932]
http://dx.doi.org/10.1039/b504806k
2. Messerschmidt A, Huber R.
The blue oxidases, ascorbate oxidase, laccase and ceruloplasmin. Modelling and structural relationships.
Eur. J. Biochem. 187 341-52 1990 [PubMed: 2404764]
http://dx.doi.org/10.1111/j.1432-1033.1990.tb15311.x
3. Ouzounis C, Sander C.
A structure-derived sequence pattern for the detection of type I copper binding domains in distantly related proteins.
FEBS Lett. 279 73-8 1991 [PubMed: 1995346]
http://dx.doi.org/10.1016/0014-5793(91)80254-Z
4. Roberts SA, Weichsel A, Grass G, Thakali K, Hazzard JT, Tollin G, Rensing C, Montfort WR.
Crystal structure and electron transfer kinetics of CueO, a multicopper oxidase required for copper homeostasis in Escherichia coli.
Proc. Natl. Acad. Sci. U.S.A. 99 2766-71 2002 [PubMed: 11867755]
http://dx.doi.org/10.1073/pnas.052710499
5. Nakamura K, Kawabata T, Yura K, Go N.
Novel types of two-domain multi-copper oxidases: possible missing links in the evolution.
FEBS Lett. 553 239-44 2003 [PubMed: 14572631]
http://dx.doi.org/10.1016/S0014-5793(03)01000-7
6. Suzuki S, Kataoka K, Yamaguchi K.
Metal coordination and mechanism of multicopper nitrite reductase.
Acc. Chem. Res. 33 728-35 2000 [PubMed: 11041837]
http://dx.doi.org/10.1021/ar9900257
7. Mann KG, Jenny RJ, Krishnaswamy S.
Cofactor proteins in the assembly and expression of blood clotting enzyme complexes.
Annu. Rev. Biochem. 57 915-56 1988 [PubMed: 3052293]
http://dx.doi.org/10.1146/annurev.bi.57.070188.004411
8. Askwith C, Eide D, Van Ho A, Bernard PS, Li L, Davis-Kaplan S, Sipe DM, Kaplan J.
The FET3 gene of S. cerevisiae encodes a multicopper oxidase required for ferrous iron uptake.
Cell 76 403-10 1994 [PubMed: 8293473]
http://dx.doi.org/10.1016/0092-8674(94)90346-8

Additional ReadingHelp
Wijma HJ, MacPherson I, Farver O, Tocheva EI, Pecht I, Verbeet MP, Murphy ME, Canters GW.
Effect of the methionine ligand on the reorganization energy of the type-1 copper site of nitrite reductase.
J. Am. Chem. Soc. 129 2007 519-25 [PubMed: 17227014]
http://dx.doi.org/10.1021/ja064763j
Hakulinen N, Andberg M, Kallio J, Koivula A, Kruus K, Rouvinen J.
A near atomic resolution structure of a Melanocarpus albomyces laccase.
J. Struct. Biol. 162 2008 29-39 [PubMed: 18249560]
http://dx.doi.org/10.1016/j.jsb.2007.12.003
Ellis MJ, Buffey SG, Hough MA, Hasnain SS.
On-line optical and X-ray spectroscopies with crystallography: an integrated approach for determining metalloprotein structures in functionally well defined states.
15 2008 433-9 [PubMed: 18728313]
http://dx.doi.org/10.1107/S0909049508014945
Tocheva EI, Eltis LD, Murphy ME.
Conserved active site residues limit inhibition of a copper-containing nitrite reductase by small molecules.
Biochemistry 47 2008 4452-60 [PubMed: 18358002]
http://dx.doi.org/10.1021/bi7020537
Messerschmidt A, Ladenstein R, Huber R, Bolognesi M, Avigliano L, Petruzzelli R, Rossi A, Finazzi-Agro A.
Refined crystal structure of ascorbate oxidase at 1.9 A resolution.
J. Mol. Biol. 224 1992 179-205 [PubMed: 1548698]
http://dx.doi.org/10.1016/0022-2836(92)90583-6
Hough MA, Antonyuk SV, Strange RW, Eady RR, Hasnain SS.
Crystallography with online optical and X-ray absorption spectroscopies demonstrates an ordered mechanism in copper nitrite reductase.
J. Mol. Biol. 378 2008 353-61 [PubMed: 18353369]
http://dx.doi.org/10.1016/j.jmb.2008.01.097
Page CC, Moser CC, Chen X, Dutton PL.
Natural engineering principles of electron tunnelling in biological oxidation-reduction.
Nature 402 1999 47-52 [PubMed: 10573417]
http://dx.doi.org/10.1038/46972
Grossmann JG, Ingledew WJ, Harvey I, Strange RW, Hasnain SS.
X-ray absorption studies and homology modeling define the structural features that specify the nature of the copper site in rusticyanin.
Biochemistry 34 1995 8406-14 [PubMed: 7599131]
http://dx.doi.org/10.1021/bi00026a023
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