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InterPro: IPR011702 Glutamine amidotransferase superfamily

Protein matchesHelp
UniProtKB
Matches:
6972 proteins
AccessionHelp IPR011702 GATASE
SecondaryHelp IPR000991
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR017926 Glutamine amidotransferase type 1
Children IPR000991 Glutamine amidotransferase class-I, C-terminal
Found in IPR011697 Peptidase C26
GO Term annotationHelp
Process GO:0006541 glutamine metabolic process
Function GO:0003824 catalytic activity
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

Glutamine amidotransferase (GATase) (EC:2.4.2) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This activity is found in a range of biosynthetic enzymes, including glutamine amidotransferase, anthranilate synthase component II, p-aminobenzoate, and glutamine-dependent carbamoyl-transferase (CPSase). Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. On the basis of sequence similarities two classes of GATase domains have been identified [1, 2], class-I (also known as trpG-type) and class-II (also known as purF-type). Class-I GATase domains are defined by a conserved catalytic triad consisting of cysteine, histidine and glutamate. Class-I GPTase domains have been found in the following enzymes, the second component of anthranilate synthase and 4-amino-4-deoxychorismate (ADC) synthase; CTP synthase; GMP synthase; glutamine-dependent carbamoyl-phosphate synthase; phosphoribosylformylglycinamidine synthase II; and the histidine amidotransferase hisH.

Structural linksHelp
SCOP: c.23.16.1
CATH: 3.40.50.880
Database linksHelp
Enzyme: EC:6.3.5

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR011702 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
P00937 Anthranilate synthase component 2

P05990 CAD protein

P49915 GMP synthase [glutamine-hydrolyzing]

Q09580 Probable GMP synthase [glutamine-hydrolyzing]

Q3THK7 GMP synthase [glutamine-hydrolyzing]

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR013785 Aldolase-type TIM barrel
IPR011702 Glutamine amidotransferase superfamily
IPR002195 Dihydroorotase, conserved site
IPR004739 GMP synthase, N-terminal
IPR005479 Carbamoyl phosphate synthetase, large subunit, ATP-binding
IPR011761 ATP-grasp fold
IPR011059 Metal-dependent hydrolase, composite domain
IPR006680 Amidohydrolase 1
IPR001468 Indole-3-glycerol phosphate synthase, central region
IPR000991 Glutamine amidotransferase class-I, C-terminal
IPR001674 GMP synthase, C-terminal
IPR005481 Carbamoyl phosphate synthase, large subunit, N-terminal
IPR005480 Carbamoyl phosphate synthetase, large subunit, oligomerisation
IPR013816 ATP-grasp fold, subdomain 2
IPR002082 Aspartate carbamoyltransferase, eukaryotic
IPR013817 Pre-ATP-grasp fold
IPR013798 Indole-3-glycerol phosphate synthase
IPR014729 Rossmann-like alpha/beta/alpha sandwich fold
IPR005483 Carbamoyl phosphate synthase, large subunit
IPR018317 Queuosine synthesis-like
IPR018318 tRNA methyl transferase-like
IPR017926 Glutamine amidotransferase type 1
IPR006221 Glutamine amidotransferase of anthranilate synthase
IPR006220 Anthranilate synthase component II/delta crystallin
IPR016185 PreATP-grasp-like fold
IPR006130 Aspartate/ornithine carbamoyltransferase
IPR004722 Dihydroorotase multifunctional complex type
IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding
IPR002474 Carbamoyl phosphate synthase, small subunit, N-terminal
IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain
IPR011607 MGS-like
IPR011060 Ribulose-phosphate binding barrel
IPR006275 Carbamoyl phosphate synthase, large subunit, glutamine-dependent
IPR006274 Carbamoyl phosphate synthase, small subunit
IPR001317 Carbamoyl phosphate synthase, GATase domain
ModBase
SWISS-MODEL
PDB Chain
CATH Domain

PublicationsHelp
1. Weng ML, Zalkin H.
Structural role for a conserved region in the CTP synthetase glutamine amide transfer domain.
J. Bacteriol. 169 3023-8 1987 [PubMed: 3298209]
http://www.pubmedcentral.nih.gov/picrender.fcgi?tool=EBI&pubmedid=3298209&action=stream&blobtype=pdf
2. Nyunoya H, Lusty CJ.
Sequence of the small subunit of yeast carbamyl phosphate synthetase and identification of its catalytic domain.
J. Biol. Chem. 259 9790-8 1984 [PubMed: 6086650]
http://intl.jbc.org/cgi/content/abstract/259/15/9790

Additional ReadingHelp
Morollo AA, Eck MJ.
Structure of the cooperative allosteric anthranilate synthase from Salmonella typhimurium.
Nat. Struct. Biol. 8 2001 243-7 [PubMed: 11224570]
http://dx.doi.org/10.1038/84988
Thoden JB, Huang X, Raushel FM, Holden HM.
Carbamoyl-phosphate synthetase. Creation of an escape route for ammonia.
J. Biol. Chem. 277 2002 39722-7 [PubMed: 12130656]
http://dx.doi.org/10.1074/jbc.M206915200
Thoden JB, Huang X, Kim J, Raushel FM, Holden HM.
Long-range allosteric transitions in carbamoyl phosphate synthetase.
Protein Sci. 13 2004 2398-405 [PubMed: 15322282]
http://dx.doi.org/10.1110/ps.04822704
Orbach MJ, Sachs MS, Yanofsky C.
The Neurospora crassa arg-2 locus. Structure and expression of the gene encoding the small subunit of arginine-specific carbamoyl phosphate synthetase.
J. Biol. Chem. 265 1990 10981-7 [PubMed: 2141606]
http://intl.jbc.org/cgi/content/abstract/265/19/10981
Werner M, Feller A, Pierard A.
Nucleotide sequence of yeast gene CP A1 encoding the small subunit of arginine-pathway carbamoyl-phosphate synthetase. Homology of the deduced amino acid sequence to other glutamine amidotransferases.
Eur. J. Biochem. 146 1985 371-81 [PubMed: 3881260]
http://dx.doi.org/10.1111/j.1432-1033.1985.tb08663.x
Spraggon G, Kim C, Nguyen-Huu X, Yee MC, Yanofsky C, Mills SE.
The structures of anthranilate synthase of Serratia marcescens crystallized in the presence of (i) its substrates, chorismate and glutamine, and a product, glutamate, and (ii) its end-product inhibitor, L-tryptophan.
Proc. Natl. Acad. Sci. U.S.A. 98 2001 6021-6 [PubMed: 11371633]
http://dx.doi.org/10.1073/pnas.111150298
Miles BW, Thoden JB, Holden HM, Raushel FM.
Inactivation of the amidotransferase activity of carbamoyl phosphate synthetase by the antibiotic acivicin.
J. Biol. Chem. 277 2002 4368-73 [PubMed: 11729189]
http://dx.doi.org/10.1074/jbc.M108582200
Kilstrup M, Lu CD, Abdelal A, Neuhard J.
Nucleotide sequence of the carA gene and regulation of the carAB operon in Salmonella typhimurium.
Eur. J. Biochem. 176 1988 421-9 [PubMed: 2843375]
http://dx.doi.org/10.1111/j.1432-1033.1988.tb14299.x
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InterPro 23.1