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InterPro: IPR011059 Metal-dependent hydrolase, composite domain

Protein matchesHelp
UniProtKB
Matches:
13228 proteins
AccessionHelp IPR011059 Metal-dep_hydrolase_composite
TypeHelp Domain
SignaturesHelp
InterPro RelationshipsHelp
Children IPR020043 Amidohydrolase EF0837/AHA3915, putative
Found in IPR003764 N-acetylglucosamine-6-phosphate deacetylase
IPR004722 Dihydroorotase multifunctional complex type
IPR005848 Urease, alpha subunit
IPR005920 Imidazolonepropionase
IPR006679 Adenine deaminase
IPR008221 Urease
IPR010229 Peptidase M38, beta-aspartyl dipeptidase
IPR010252 Formiminoglutamate deiminase
IPR011778 D-hydantoinase
IPR012027 Formylmethanofuran dehydrogenase, subunit A
IPR012696 Phosphonate metabolism PhnM
IPR012855 D-aminoacylase, C-terminal
IPR014311 Guanine deaminase
IPR017593 Allantoinase
IPR017594 Guanine deaminase, bacterial
IPR017700 Putative selenium metabolism protein SsnA
Contains IPR002195 Dihydroorotase, conserved site
IPR011612 Urease alpha-subunit, N-terminal
IPR017950 Urease, alpha subunit, conserved site
IPR017951 Urease, alpha subunit, C-terminal
IPR017952 Urease, alpha subunit, core
GO Term annotationHelp
Function GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

The composite domain of metal-dependent hydrolases has a pseudo-barrel fold that is interrupted by the catalytic beta/alpha barrel domain. This domain is found in a variety of bacterial and fungal enzymes, including: cytosine deaminase, an enzyme that is important in the pyrimidine salvage pathway [1]; the alpha-subunit of urease, a virulence factor of gastric pathogens such as Helicobacter pylori (Campylobacter pylori) [2]; D- and L-hydantoinases (dihydropyrimidinase), which catalyse the production of D- and L-amino acids, respectively [3]; isoaspartyl dipeptidase from Escherichia coli, which functions in protein degradation [4]; N-acetylglucosamine-6-phosphate deacetylase, which is an enzyme from the biosynthetic pathway to amino-sugar-nucleotides [5]; and N-acyl-D-amino acid amidohydrolase (D-aminoacylase), involved in the synthesis of D-amino acids [6].

Structural linksHelp
PDB - click here
Database linksHelp
Enzyme: EC:3.5

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR011059 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
P05990 CAD protein

P32375 Allantoinase

P34480 Putative N-acetylglucosamine-6-phosphate deacetylase

P97427 Dihydropyrimidinase-related protein 1

Q14117 Dihydropyrimidinase

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR011702 Glutamine amidotransferase superfamily
IPR002195 Dihydroorotase, conserved site
IPR003764 N-acetylglucosamine-6-phosphate deacetylase
IPR005479 Carbamoyl phosphate synthetase, large subunit, ATP-binding
IPR011761 ATP-grasp fold
IPR011059 Metal-dependent hydrolase, composite domain
IPR006680 Amidohydrolase 1
IPR000991 Glutamine amidotransferase class-I, C-terminal
IPR017593 Allantoinase
IPR005481 Carbamoyl phosphate synthase, large subunit, N-terminal
IPR005480 Carbamoyl phosphate synthetase, large subunit, oligomerisation
IPR013816 ATP-grasp fold, subdomain 2
IPR013817 Pre-ATP-grasp fold
IPR002082 Aspartate carbamoyltransferase, eukaryotic
IPR005483 Carbamoyl phosphate synthase, large subunit
IPR011778 D-hydantoinase
IPR017926 Glutamine amidotransferase type 1
IPR016185 PreATP-grasp-like fold
IPR006130 Aspartate/ornithine carbamoyltransferase
IPR018228 Deoxyribonuclease, TatD-related, conserved site
IPR004722 Dihydroorotase multifunctional complex type
IPR002474 Carbamoyl phosphate synthase, small subunit, N-terminal
IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding
IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain
IPR011607 MGS-like
IPR006275 Carbamoyl phosphate synthase, large subunit, glutamine-dependent
IPR006274 Carbamoyl phosphate synthase, small subunit
IPR001317 Carbamoyl phosphate synthase, GATase domain
ModBase
SWISS-MODEL
PDB Chain
CATH Domain
SCOP Domain

PublicationsHelp
1. Ireton GC, McDermott G, Black ME, Stoddard BL.
The structure of Escherichia coli cytosine deaminase.
J. Mol. Biol. 315 687-97 2002 [PubMed: 11812140]
http://dx.doi.org/10.1006/jmbi.2001.5277
2. Davies BJ, de Vries N, Rijpkema SG, van Vliet AH, Penn CW.
Transcriptional and mutational analysis of the Helicobacter pylori urease promoter.
FEMS Microbiol. Lett. 213 27-32 2002 [PubMed: 12127484]
http://dx.doi.org/10.1111/j.1574-6968.2002.tb11281.x
3. Xu Z, Liu Y, Yang Y, Jiang W, Arnold E, Ding J.
Crystal structure of D-Hydantoinase from Burkholderia pickettii at a resolution of 2.7 Angstroms: insights into the molecular basis of enzyme thermostability.
J. Bacteriol. 185 4038-49 2003 [PubMed: 12837777]
http://dx.doi.org/10.1128/JB.185.14.4038-4049.2003
4. Thoden JB, Marti-Arbona R, Raushel FM, Holden HM.
High-resolution X-ray structure of isoaspartyl dipeptidase from Escherichia coli.
Biochemistry 42 4874-82 2003 [PubMed: 12718528]
http://dx.doi.org/10.1021/bi034233p
5. Vincent F, Yates D, Garman E, Davies GJ, Brannigan JA.
The three-dimensional structure of the N-acetylglucosamine-6-phosphate deacetylase, NagA, from Bacillus subtilis: a member of the urease superfamily.
J. Biol. Chem. 279 2809-16 2004 [PubMed: 14557261]
http://dx.doi.org/10.1074/jbc.M310165200
6. Liaw SH, Chen SJ, Ko TP, Hsu CS, Chen CJ, Wang AH, Tsai YC.
Crystal structure of D-aminoacylase from Alcaligenes faecalis DA1. A novel subset of amidohydrolases and insights into the enzyme mechanism.
J. Biol. Chem. 278 4957-62 2003 [PubMed: 12454005]
http://dx.doi.org/10.1074/jbc.M210795200

Additional ReadingHelp
Hall RS, Brown S, Fedorov AA, Fedorov EV, Xu C, Babbitt PC, Almo SC, Raushel FM.
Structural diversity within the mononuclear and binuclear active sites of N-acetyl-D-glucosamine-6-phosphate deacetylase.
Biochemistry 46 2007 7953-62 [PubMed: 17567048]
http://dx.doi.org/10.1021/bi700544c
Ferreira FM, Mendoza-Hernandez G, Castaneda-Bueno M, Aparicio R, Fischer H, Calcagno ML, Oliva G.
Structural analysis of N-acetylglucosamine-6-phosphate deacetylase apoenzyme from Escherichia coli.
J. Mol. Biol. 359 2006 308-21 [PubMed: 16630633]
http://dx.doi.org/10.1016/j.jmb.2006.03.024
Tyagi R, Kumaran D, Burley SK, Swaminathan S.
X-ray structure of imidazolonepropionase from Agrobacterium tumefaciens at 1.87 A resolution.
Proteins 69 2007 652-8 [PubMed: 17640072]
http://dx.doi.org/10.1002/prot.21559
Hermann JC, Marti-Arbona R, Fedorov AA, Fedorov E, Almo SC, Shoichet BK, Raushel FM.
Structure-based activity prediction for an enzyme of unknown function.
Nature 448 2007 775-9 [PubMed: 17603473]
http://dx.doi.org/10.1038/nature05981
Tyagi R, Eswaramoorthy S, Burley SK, Raushel FM, Swaminathan S.
A common catalytic mechanism for proteins of the HutI family.
Biochemistry 47 2008 5608-15 [PubMed: 18442260]
http://dx.doi.org/10.1021/bi800180g
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InterPro 24.0