 |
InterPro: IPR011059 Metal-dependent hydrolase, composite domain
Protein matches
|
UniProtKB Matches: 13228 proteins |
|
Accession
|
IPR011059 Metal-dep_hydrolase_composite |
Type
|
Domain |
Signatures
|
|
InterPro Relationships
|
|
Children
|
IPR020043 Amidohydrolase EF0837/AHA3915, putative
|
|
Found in
|
IPR003764 N-acetylglucosamine-6-phosphate deacetylase
IPR004722 Dihydroorotase multifunctional complex type
IPR005848 Urease, alpha subunit
IPR005920 Imidazolonepropionase
IPR006679 Adenine deaminase
IPR008221 Urease
IPR010229 Peptidase M38, beta-aspartyl dipeptidase
IPR010252 Formiminoglutamate deiminase
IPR011778 D-hydantoinase
IPR012027 Formylmethanofuran dehydrogenase, subunit A
IPR012696 Phosphonate metabolism PhnM
IPR012855 D-aminoacylase, C-terminal
IPR014311 Guanine deaminase
IPR017593 Allantoinase
IPR017594 Guanine deaminase, bacterial
IPR017700 Putative selenium metabolism protein SsnA
|
|
Contains
|
IPR002195 Dihydroorotase, conserved site
IPR011612 Urease alpha-subunit, N-terminal
IPR017950 Urease, alpha subunit, conserved site
IPR017951 Urease, alpha subunit, C-terminal
IPR017952 Urease, alpha subunit, core
|
GO Term annotation
|
|
Function
|
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
|
|
InterPro annotation
|
|
Entry Details in BioMart
|
Abstract
|
The composite domain of metal-dependent hydrolases has a pseudo-barrel fold that is interrupted by the catalytic beta/alpha barrel domain. This domain is found in a variety of bacterial and fungal enzymes, including: cytosine deaminase, an enzyme that is important in the pyrimidine salvage pathway [1]; the alpha-subunit of urease, a virulence factor of gastric pathogens such as Helicobacter pylori (Campylobacter pylori) [2]; D- and L-hydantoinases (dihydropyrimidinase), which catalyse the production of D- and L-amino acids, respectively [3]; isoaspartyl dipeptidase from Escherichia coli, which functions in protein degradation [4]; N-acetylglucosamine-6-phosphate deacetylase, which is an enzyme from the biosynthetic pathway to amino-sugar-nucleotides [5]; and N-acyl-D-amino acid amidohydrolase (D-aminoacylase), involved in the synthesis of D-amino acids [6].
|
Structural links
|
SCOP:
b.92.1.1
,
b.92.1.10
,
b.92.1.2
,
b.92.1.3
,
b.92.1.4
,
b.92.1.5
,
b.92.1.6
,
b.92.1.7
,
b.92.1.8
,
c.1.9.10
,
c.1.9.13
,
c.1.9.14
,
c.1.9.17
,
c.1.9.2
,
c.1.9.5
,
c.1.9.6
,
c.1.9.9
|
Database links
|
|
Example proteins
|
P05990 CAD protein
P32375 Allantoinase
P34480 Putative N-acetylglucosamine-6-phosphate deacetylase
P97427 Dihydropyrimidinase-related protein 1
Q14117 Dihydropyrimidinase
More proteins
Example Proteins Key
| InterPro entry accession number/name and structure databases |
Colour code |
| IPR011702 |
Glutamine amidotransferase superfamily |
 |
| IPR002195 |
Dihydroorotase, conserved site |
 |
| IPR003764 |
N-acetylglucosamine-6-phosphate deacetylase |
 |
| IPR005479 |
Carbamoyl phosphate synthetase, large subunit, ATP-binding |
 |
| IPR011761 |
ATP-grasp fold |
 |
| IPR011059 |
Metal-dependent hydrolase, composite domain |
 |
| IPR006680 |
Amidohydrolase 1 |
 |
| IPR000991 |
Glutamine amidotransferase class-I, C-terminal |
 |
| IPR017593 |
Allantoinase |
 |
| IPR005481 |
Carbamoyl phosphate synthase, large subunit, N-terminal |
 |
| IPR005480 |
Carbamoyl phosphate synthetase, large subunit, oligomerisation |
 |
| IPR013816 |
ATP-grasp fold, subdomain 2 |
 |
| IPR013817 |
Pre-ATP-grasp fold |
 |
| IPR002082 |
Aspartate carbamoyltransferase, eukaryotic |
 |
| IPR005483 |
Carbamoyl phosphate synthase, large subunit |
 |
| IPR011778 |
D-hydantoinase |
 |
| IPR017926 |
Glutamine amidotransferase type 1 |
 |
| IPR016185 |
PreATP-grasp-like fold |
 |
| IPR006130 |
Aspartate/ornithine carbamoyltransferase |
 |
| IPR018228 |
Deoxyribonuclease, TatD-related, conserved site |
 |
| IPR004722 |
Dihydroorotase multifunctional complex type |
 |
| IPR002474 |
Carbamoyl phosphate synthase, small subunit, N-terminal |
 |
| IPR006132 |
Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding |
 |
| IPR006131 |
Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain |
 |
| IPR011607 |
MGS-like |
 |
| IPR006275 |
Carbamoyl phosphate synthase, large subunit, glutamine-dependent |
 |
| IPR006274 |
Carbamoyl phosphate synthase, small subunit |
 |
| IPR001317 |
Carbamoyl phosphate synthase, GATase domain |
 |
|
ModBase |
 |
|
SWISS-MODEL |
 |
|
PDB Chain |
 |
|
CATH Domain |
 |
|
SCOP Domain |
 |
|
Publications
|
|
1.
|
Ireton GC, McDermott G, Black ME, Stoddard BL.
The structure of Escherichia coli cytosine deaminase.
J. Mol. Biol. 315 687-97 2002
[PubMed: 11812140]
http://dx.doi.org/10.1006/jmbi.2001.5277
|
|
2.
|
Davies BJ, de Vries N, Rijpkema SG, van Vliet AH, Penn CW.
Transcriptional and mutational analysis of the Helicobacter pylori urease promoter.
FEMS Microbiol. Lett. 213 27-32 2002
[PubMed: 12127484]
http://dx.doi.org/10.1111/j.1574-6968.2002.tb11281.x
|
|
3.
|
Xu Z, Liu Y, Yang Y, Jiang W, Arnold E, Ding J.
Crystal structure of D-Hydantoinase from Burkholderia pickettii at a resolution of 2.7 Angstroms: insights into the molecular basis of enzyme thermostability.
J. Bacteriol. 185 4038-49 2003
[PubMed: 12837777]
http://dx.doi.org/10.1128/JB.185.14.4038-4049.2003
|
|
4.
|
Thoden JB, Marti-Arbona R, Raushel FM, Holden HM.
High-resolution X-ray structure of isoaspartyl dipeptidase from Escherichia coli.
Biochemistry 42 4874-82 2003
[PubMed: 12718528]
http://dx.doi.org/10.1021/bi034233p
|
|
5.
|
Vincent F, Yates D, Garman E, Davies GJ, Brannigan JA.
The three-dimensional structure of the N-acetylglucosamine-6-phosphate deacetylase, NagA, from Bacillus subtilis: a member of the urease superfamily.
J. Biol. Chem. 279 2809-16 2004
[PubMed: 14557261]
http://dx.doi.org/10.1074/jbc.M310165200
|
|
6.
|
Liaw SH, Chen SJ, Ko TP, Hsu CS, Chen CJ, Wang AH, Tsai YC.
Crystal structure of D-aminoacylase from Alcaligenes faecalis DA1. A novel subset of amidohydrolases and insights into the enzyme mechanism.
J. Biol. Chem. 278 4957-62 2003
[PubMed: 12454005]
http://dx.doi.org/10.1074/jbc.M210795200
|
Additional Reading
|
|
Hall RS, Brown S, Fedorov AA, Fedorov EV, Xu C, Babbitt PC, Almo SC, Raushel FM.
Structural diversity within the mononuclear and binuclear active sites of N-acetyl-D-glucosamine-6-phosphate deacetylase.
Biochemistry 46 2007 7953-62
[PubMed: 17567048]
http://dx.doi.org/10.1021/bi700544c
|
|
Ferreira FM, Mendoza-Hernandez G, Castaneda-Bueno M, Aparicio R, Fischer H, Calcagno ML, Oliva G.
Structural analysis of N-acetylglucosamine-6-phosphate deacetylase apoenzyme from Escherichia coli.
J. Mol. Biol. 359 2006 308-21
[PubMed: 16630633]
http://dx.doi.org/10.1016/j.jmb.2006.03.024
|
|
Tyagi R, Kumaran D, Burley SK, Swaminathan S.
X-ray structure of imidazolonepropionase from Agrobacterium tumefaciens at 1.87 A resolution.
Proteins 69 2007 652-8
[PubMed: 17640072]
http://dx.doi.org/10.1002/prot.21559
|
|
Hermann JC, Marti-Arbona R, Fedorov AA, Fedorov E, Almo SC, Shoichet BK, Raushel FM.
Structure-based activity prediction for an enzyme of unknown function.
Nature 448 2007 775-9
[PubMed: 17603473]
http://dx.doi.org/10.1038/nature05981
|
|
Tyagi R, Eswaramoorthy S, Burley SK, Raushel FM, Swaminathan S.
A common catalytic mechanism for proteins of the HutI family.
Biochemistry 47 2008 5608-15
[PubMed: 18442260]
http://dx.doi.org/10.1021/bi800180g
|
|