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InterPro: IPR010107 Glutamate decarboxylase

Protein matchesHelp
UniProtKB
Matches:
595 proteins
AccessionHelp IPR010107 Glutamate_decarboxylase
TypeHelp Family
SignaturesHelp
InterPro RelationshipsHelp
Parent IPR002129 Pyridoxal phosphate-dependent decarboxylase
Contains IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
IPR015424 Pyridoxal phosphate-dependent transferase, major domain
GO Term annotationHelp
Process GO:0006536 glutamate metabolic process
Function GO:0004351 glutamate decarboxylase activity
GO:0030170 pyridoxal phosphate binding
InterPro annotation
BioMart Logo Entry Details in BioMart
AbstractHelp

This entry represents glutamate decarboxylase (Gad;EC: 4.1.1.15) it is a pyridoxal 5'-phosphate (PLP)-dependent enzyme, which catalyses the irreversible alpha-decarboxylation of L-glutamate to gamma-aminobutyrate (GABA). This enzyme is widely distributed amongst eukaryotes and prokaryotes, but its function varies in different organisms [1].

GadD has a crucial role in the vertebrate central nervous system where it is responsible for the synthesis of GABA, the major inhibitory neurotransmitter. In the majority of vertebrates Gad occurs in two isoforms, Gad65 and Gad67, both active at neutral pH [2]. Gad isoforms (GadA and GadB) have also been reported in some bacterial species, including the Gram-negative bacterium [3] and Gram-positive bacterium [4].

A unique feature of plant and yeast Gad is the presence of a calmodulin (CaM)-binding domain in the C-terminal region. In Saccharomyces cerevisiae (Baker's yeast), Gad expression is required for normal oxidative stress tolerance [5]. In plants, Gad is thought to be a stress-adapter chaperonin sensing Ca2+ signals.

Structural linksHelp
SCOP: c.67.1.6
Database linksHelp
Enzyme: EC:4.1.1.15

Taxonomic coverageHelp

Overlapping InterPro entriesHelp
IPR010107 Numbers of overlapping proteins Average numbers of overlapping amino acids

Example proteinsHelp
P69908 Glutamate decarboxylase alpha

Q04792 Glutamate decarboxylase

Q07346 Glutamate decarboxylase

Q42521 Glutamate decarboxylase 1

More proteins


Example Proteins Key


InterPro entry accession number/name and structure databases Colour code
IPR015424 Pyridoxal phosphate-dependent transferase, major domain
IPR010107 Glutamate decarboxylase
IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
IPR002129 Pyridoxal phosphate-dependent decarboxylase
SWISS-MODEL
PDB Chain
ModBase
SCOP Domain

PublicationsHelp
1. Capitani G, De Biase D, Aurizi C, Gut H, Bossa F, Grutter MG.
Crystal structure and functional analysis of Escherichia coli glutamate decarboxylase.
EMBO J. 22 4027-37 2003 [PubMed: 12912902]
http://dx.doi.org/10.1093/emboj/cdg403
2. Soghomonian JJ, Martin DL.
Two isoforms of glutamate decarboxylase: why?
Trends Pharmacol. Sci. 19 500-5 1998 [PubMed: 9871412]
http://dx.doi.org/10.1016/S0165-6147(98)01270-X
3. Smith DK, Kassam T, Singh B, Elliott JF.
Escherichia coli has two homologous glutamate decarboxylase genes that map to distinct loci.
J. Bacteriol. 174 5820-6 1992 [PubMed: 1522060]
http://www.pubmedcentral.nih.gov/picrender.fcgi?tool=EBI&pubmedid=1522060&action=stream&blobtype=pdf
4. Cotter PD, Gahan CG, Hill C.
A glutamate decarboxylase system protects Listeria monocytogenes in gastric fluid.
Mol. Microbiol. 40 465-75 2001 [PubMed: 11309128]
http://dx.doi.org/10.1046/j.1365-2958.2001.02398.x
5. Coleman ST, Fang TK, Rovinsky SA, Turano FJ, Moye-Rowley WS.
Expression of a glutamate decarboxylase homologue is required for normal oxidative stress tolerance in Saccharomyces cerevisiae.
J. Biol. Chem. 276 244-50 2001 [PubMed: 11031268]
http://dx.doi.org/10.1074/jbc.M007103200

Additional ReadingHelp
Gut H, Pennacchietti E, John RA, Bossa F, Capitani G, De Biase D, Grutter MG.
Escherichia coli acid resistance: pH-sensing, activation by chloride and autoinhibition in GadB.
EMBO J. 25 2006 2643-51 [PubMed: 16675957]
http://dx.doi.org/10.1038/sj.emboj.7601107
Dutyshev DI, Darii EL, Fomenkova NP, Pechik IV, Polyakov KM, Nikonov SV, Andreeva NS, Sukhareva BS.
Structure of Escherichia coli glutamate decarboxylase (GADalpha) in complex with glutarate at 2.05 angstroms resolution.
Acta Crystallogr. D Biol. Crystallogr. 61 2005 230-5 [PubMed: 15735332]
http://dx.doi.org/10.1107/S0907444904032147
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InterPro 23.1